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[甘氨酸诱导细菌外膜囊泡的脂质组学分析]

[Lipidomics analysis of glycine-induced bacterial outer membrane vesicles].

作者信息

Song Jing-Yuan, Qi Xiu-Lei, Guo Huai-Zhong, Hu Liang-Hai

机构信息

College of Pharmaceutical Sciences, Hebei University, Baoding 071002, China.

School of Life Sciences, Jilin University, Changchun 130023, China.

出版信息

Se Pu. 2025 May;43(5):547-555. doi: 10.3724/SP.J.1123.2024.10017.

DOI:10.3724/SP.J.1123.2024.10017
PMID:40331618
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12059986/
Abstract

Outer membrane vesicles (OMVs) are nanoparticles with double-phospholipid membrane structures that are secreted by gram-negative bacteria and carry a variety of bioactive substances from parental bacterial cells; consequently, OMVs serve as disease markers. Moreover, bacterial OMVs are potential anticancer- and antibacterial-drug carriers. While the addition of glycine during bacterial culturing promotes the secretion of bacterial OMVs, glycine-induced differences in the lipid compositions of such OMVs have not yet been reported. In this study, the key plasma membrane components of bacterial OMVs before and after glycine induction were analyzed using lipidomics. Bacterial OMVs were captured from bacterial-culture supernatants using an amphiphilic dendritic polymeric supramolecular probe. Two sets of enriched bacterial OMVs were characterized and their enrichment efficiencies determined, after which the numbers and purities of the OMVs within the samples were determined using a nanofluidic assay. Lipids were extracted using the methyl -butyl ether lipid-extraction method when consistent numbers were recorded. The lipid compositions of the bacterial OMVs before and after glycine induction were analyzed using an ultra-performance liquid chromatography-ion mobility spectrometry-quadrupole time-of-flight mass spectrometer (UPLC-IMS-QTOF-MS) and MS-DIAL software. Differential lipid species in the key plasma membranes of the bacterial OMVs following glycine induction were recorded along with their corresponding amounts. Detection was accomplished in positive-ion scanning mode using an ACQUITY UPLC BEH C18 column following UPLC-MS injection, and MS mass-spectrometry data-acquisition mode. The lipid components in the two groups were determined by combining mass-spectrometric and software-analysis data, which revealed that the addition of glycine to the Nissle 1917 culture led to two-to-three-times higher concentrations of OMVs than observed for the untreated group under the same culturing and enrichment conditions. Particle numbers measured for the same volume revealed one-order-of-magnitude more bacterial OMVs after induction than before, with the treated group exhibiting slightly larger particles (on average); however, these particles were better dispersed and less likely to aggregate. The identified lipid components were categorized to determine the amount of each lipid type. Differentially expressed lipids were subsequently screened according to experimental conditions; significantly different expression levels were observed following glycine induction, with 820 lipids identified among the 10165 components detected. The lipid classes were ranked in order of quantity as: glycerolipids (GL), fatty acids (FA), sphingolipids (SP), glycerophospholipids (GP), saccharolipids (SL), and sterol lipids (ST), among which 463 GL lipid fractions (56.4% of all characterized lipids) were recorded. The ST lipid fraction contained the fewest members (10) and qualitative lipids were determined to make up 1.2% of the total. The addition of glycine to the culture was found to induce significant changes in the surface and internal lipid composition of the OMVs, with significantly more ceramide (Cer) and lysophosphatidyl choline (LPC), and significantly less bis(monoacylglycerol)phosphate (BMP) expressed. Partial triglyceride (TG) and sphingomyelin (SM) were irregularly expressed following glycine treatment, with equal amounts of up- and down-regulated lipids observed. This study provides a reference for subsequent in-depth studies into the lipid compositions of OMVs and their use as novel drug-delivery carriers. The expression of TGs and SM showed irregular changes, which is worthy of the next step of in-depth exploration of its regulatory mechanism, and the present study provides a certain reference for the subsequent in-depth study of the lipid composition of OMV and its use in the study of novel drug delivery carriers.

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7c4/12059986/774c62335773/img_4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7c4/12059986/983a43edcc95/img_1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7c4/12059986/a3a6b04cac3d/img_2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7c4/12059986/8ae13a5f541a/img_3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7c4/12059986/774c62335773/img_4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7c4/12059986/983a43edcc95/img_1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7c4/12059986/a3a6b04cac3d/img_2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7c4/12059986/8ae13a5f541a/img_3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7c4/12059986/774c62335773/img_4.jpg
摘要

外膜囊泡(OMVs)是具有双磷脂膜结构的纳米颗粒,由革兰氏阴性菌分泌,携带来自亲代细菌细胞的多种生物活性物质;因此,OMVs可作为疾病标志物。此外,细菌OMVs是潜在的抗癌和抗菌药物载体。虽然在细菌培养过程中添加甘氨酸可促进细菌OMVs的分泌,但尚未有关于甘氨酸诱导此类OMVs脂质组成差异的报道。在本研究中,使用脂质组学分析了甘氨酸诱导前后细菌OMVs的关键质膜成分。使用两亲性树枝状聚合物超分子探针从细菌培养上清液中捕获细菌OMVs。对两组富集的细菌OMVs进行表征并测定其富集效率,然后使用纳米流体分析法测定样品中OMVs的数量和纯度。当记录到一致数量时,采用甲基叔丁基醚脂质提取法提取脂质。使用超高效液相色谱-离子淌度光谱-四极杆飞行时间质谱仪(UPLC-IMS-QTOF-MS)和MS-DIAL软件分析甘氨酸诱导前后细菌OMVs的脂质组成。记录甘氨酸诱导后细菌OMVs关键质膜中差异脂质种类及其相应含量。在UPLC-MS进样后,使用ACQUITY UPLC BEH C18柱在正离子扫描模式下进行检测,并采用MS质谱数据采集模式。通过结合质谱和软件分析数据确定两组中的脂质成分,结果表明,在相同的培养和富集条件下,向Nissle 1917培养物中添加甘氨酸导致OMVs浓度比未处理组高出两到三倍。对相同体积的颗粒进行计数,发现诱导后细菌OMVs的数量比诱导前多一个数量级,处理组的颗粒平均略大;然而,这些颗粒分散性更好,不太可能聚集。对鉴定出的脂质成分进行分类以确定每种脂质类型的含量。随后根据实验条件筛选差异表达的脂质;甘氨酸诱导后观察到显著不同的表达水平,在检测的10165种成分中鉴定出820种脂质。脂质类别按数量排序为:甘油脂(GL)、脂肪酸(FA)、鞘脂(SP)、甘油磷脂(GP)、糖脂(SL)和甾醇脂(ST),其中记录到463种GL脂质组分(占所有表征脂质的56.4%)。ST脂质组分包含的成员最少(10种),定性脂质占总量的1.2%。发现向培养物中添加甘氨酸会诱导OMVs表面和内部脂质组成发生显著变化,神经酰胺(Cer)和溶血磷脂酰胆碱(LPC)表达显著增加,双(单酰甘油)磷酸酯(BMP)表达显著减少。甘氨酸处理后,部分甘油三酯(TG)和鞘磷脂(SM)表达不规则,上调和下调的脂质数量相等。本研究为后续深入研究OMVs的脂质组成及其作为新型药物递送载体的应用提供了参考。TG和SM的表达呈现不规则变化,值得下一步深入探索其调控机制,本研究为后续深入研究OMVs的脂质组成及其在新型药物递送载体研究中的应用提供了一定参考。

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