用于精准基因组编辑的同源定向修复(HDR)微调:当前策略与未来方向

Fine-Tuning Homology-Directed Repair (HDR) for Precision Genome Editing: Current Strategies and Future Directions.

作者信息

Haider Sibtain, Mussolino Claudio

机构信息

Institute for Transfusion Medicine and Gene Therapy, Medical Center-University of Freiburg, 79106 Freiburg, Germany.

Center for Chronic Immunodeficiency (CCI), Medical Center-University of Freiburg, 79106 Freiburg, Germany.

出版信息

Int J Mol Sci. 2025 Apr 25;26(9):4067. doi: 10.3390/ijms26094067.

Abstract

CRISPR-Cas9 is a powerful genome-editing technology that can precisely target and cleave DNA to induce double-strand breaks (DSBs) at almost any genomic locus. While this versatility holds tremendous therapeutic potential, the predominant cellular pathway for DSB repair-non-homologous end-joining (NHEJ)-often introduces small insertions or deletions that disrupt the target site. In contrast, homology-directed repair (HDR) utilizes exogenous donor templates to enable precise gene modifications, including targeted insertions, deletions, and substitutions. However, HDR remains relatively inefficient compared to NHEJ, especially in postmitotic cells where cell cycle constraints further limit HDR. To address this challenge, numerous methodologies have been explored, ranging from inhibiting key NHEJ factors and optimizing donor templates to synchronizing cells in HDR-permissive phases and engineering HDR-enhancing fusion proteins. These strategies collectively aim to boost HDR efficiency and expand the clinical and research utility of CRISPR-Cas9. In this review, we discuss recent advances in manipulating the balance between NHEJ and HDR, examine the trade-offs and practical considerations of these approaches, and highlight promising directions for achieving high-fidelity genome editing in diverse cell types.

摘要

CRISPR-Cas9是一种强大的基因组编辑技术,它可以精确靶向并切割DNA,在几乎任何基因组位点诱导双链断裂(DSB)。虽然这种多功能性具有巨大的治疗潜力,但DSB修复的主要细胞途径——非同源末端连接(NHEJ)——通常会引入小的插入或缺失,从而破坏靶位点。相比之下,同源定向修复(HDR)利用外源性供体模板实现精确的基因修饰,包括靶向插入、缺失和替换。然而,与NHEJ相比,HDR仍然效率相对较低,尤其是在有丝分裂后细胞中,细胞周期限制进一步限制了HDR。为应对这一挑战,人们探索了许多方法,从抑制关键的NHEJ因子、优化供体模板到将细胞同步到允许HDR的阶段以及构建增强HDR的融合蛋白。这些策略共同旨在提高HDR效率,并扩大CRISPR-Cas9在临床和研究中的应用。在本综述中,我们讨论了在调控NHEJ和HDR之间平衡方面的最新进展,审视了这些方法的权衡和实际考量,并强调了在不同细胞类型中实现高保真基因组编辑的有前景的方向。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aac3/12071731/01f9714985aa/ijms-26-04067-g001.jpg

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