Samdin Tuan D, Wang Xiaoyi, Fichman Galit, Schneider Joel P
Chemical Biology Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Frederick, MD 21702, USA.
Faraday Discuss. 2025 May 14. doi: 10.1039/d5fd00018a.
Herein, we study the role that hydrophobicity plays in the temperature-dependent self-assembly of a family of β-hairpin peptide amphiphiles through the lens of thermally folding a protein from its cold-denatured state. This was facilitated by the development of new computational tools to measure solvent-accessible charge (SAC) and solvent-accessible hydrophobicity (SAH) at the resolution of atomic groups. Peptides in their disordered states are characterized by large SAH values that shift their thermal assembly transitions to observable temperatures, which is not possible for most native proteins, allowing comparisons amongst peptides to be made. We find that peptides with large SAH values assemble into β-sheet-rich fibers at lower temperatures and at faster rates than peptides having smaller SAH values. This is consistent with peptide assembly being driven by the hydrophobic effect, which involves the release of ordered water from hydrophobic moieties during assembly. We also find that peptide SAH values correlate linearly with , the midpoint of the transition defining monomeric peptide transitioning to fibrils, for peptides of similar charge. Interestingly, the data also suggest that although entropy drives assembly, the exact temperature at which the assembly transition takes place is likely influenced by additional thermodynamic considerations.
在此,我们通过从冷变性状态热折叠蛋白质的视角,研究疏水性在一类β-发夹肽两亲分子的温度依赖性自组装中所起的作用。这得益于新计算工具的开发,该工具能够在原子基团分辨率下测量溶剂可及电荷(SAC)和溶剂可及疏水性(SAH)。处于无序状态的肽具有较大的SAH值,这使得它们的热组装转变移至可观测温度,而这对大多数天然蛋白质来说是不可能的,从而能够对肽进行比较。我们发现,与具有较小SAH值的肽相比,具有较大SAH值的肽在更低温度下且以更快的速率组装成富含β-折叠的纤维。这与肽组装由疏水效应驱动相一致,疏水效应涉及组装过程中从疏水部分释放有序水。我们还发现,对于电荷相似的肽,肽的SAH值与定义单体肽向原纤维转变的转变中点呈线性相关。有趣的是,数据还表明,尽管熵驱动组装,但组装转变发生的确切温度可能受其他热力学因素影响。