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Identifying Immunomodulatory Subpopulations of Adipose Stromal Vascular Fraction and Stem/Stromal Cells Through Single-Cell Transcriptomics and Bulk Proteomics.

作者信息

Parsons Adrienne M, Ahsan Nagib, Darling Eric M

机构信息

Division of Hematology, Department of Medicine, Brigham and Women's Hospital, 02115, Boston, MA, USA.

Department of Medicine, Harvard Medical School, Boston, 02115, MA, USA.

出版信息

Stem Cell Rev Rep. 2025 May 14. doi: 10.1007/s12015-025-10889-6.


DOI:10.1007/s12015-025-10889-6
PMID:40366552
Abstract

A primary therapeutic characteristic of mesenchymal stem/stromal cells (MSCs) is their immunomodulatory activity. Adipose-derived stem/stromal cells (ASCs) are an abundant and easily isolated source of MSCs shown to have high immunosuppressive activity, making them attractive for therapy. Understanding the heterogeneous immunomodulatory potential of ASCs within the stromal vascular fraction (SVF) of adipose tissue could better inform treatment strategies. In this study, we integrate single-cell RNA sequencing (scRNA seq) with bulk proteomics to characterize subpopulations of SVF-derived ASCs that are phenotypically similar to cytokine-licensed, cultured ASCs. To better define the licensing process, we present scRNA seq and bulk proteomics data of cultured (P2) ASCs exposed to inflammatory cytokines, showing enrichment of pathways related to inflammation and apoptosis that positively correlate to the cytokine-mediated, trajectory-derived pseudotime. Using the Scissor algorithm, we integrate the proteomics data with uncultured (P0) SVF scRNA seq data, identifying an ASC subpopulation that is phenotypically like the cytokine-stimulated ASCs (Scissor-positive). Interactome analysis identifies Scissor-positive ASCs as stress adaptive immune regulators that function through IL6 and broad SEMA4 interactions and higher Visfatin signaling, while Scissor-negative ASCs show strong signatures of ECM remodeling through FN1 and immunosuppression through THY1 and MIF signaling. Our multimodal, integrative approach enabled identification of previously unidentified, distinct ASC subpopulations with differing immunomodulatory phenotypes that are present in, and can potentially be selected from, P0 SVF ASCs.

摘要

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本文引用的文献

[1]
Improving the therapeutic profile of MSCs: Cytokine priming reduces donor-dependent heterogeneity and enhances their immunomodulatory capacity.

Front Immunol. 2025-2-17

[2]
Immunomodulatory potential of cytokine-licensed human bone marrow-derived mesenchymal stromal cells correlates with potency marker expression profile.

Stem Cells. 2024-12-6

[3]
High-dimensional single-cell analysis of human natural killer cell heterogeneity.

Nat Immunol. 2024-8

[4]
Interleukin 6: at the interface of human health and disease.

Front Immunol. 2023

[5]
Mesenchymal stem cells influence monocyte/macrophage phenotype: Regulatory mode and potential clinical applications.

Biomed Pharmacother. 2023-9

[6]
Inflammatory Mesenchymal Stem Cells Express Abundant Membrane-Bound and Soluble Forms of C-Type Lectin-like CD248.

Int J Mol Sci. 2023-5-31

[7]
Dictionary learning for integrative, multimodal and scalable single-cell analysis.

Nat Biotechnol. 2024-2

[8]
Proteomics evaluation of five economical commercial abundant protein depletion kits for enrichment of diseases-specific biomarkers from blood serum.

Proteomics. 2023-10

[9]
Role and mechanism of CD90 fibroblasts in inflammatory diseases and malignant tumors.

Mol Med. 2023-2-6

[10]
Visfatin is a multifaceted molecule that exerts regulation effects on inflammation and apoptosis in RAW264.7 cells and mice immune organs.

Front Immunol. 2022

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