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在一所学术医疗中心构建并实施用于样本和数据存储的通用基础设施。

Building and implementation of a common infrastructure for specimen and data storage at an academic medical center.

作者信息

Santillan Donna A, Jacobus Laura S, Henry Michael D, Weiner George J, Winokur Patricia L, Knosp Boyd M, Davis Heath A

机构信息

Department of Obstetrics & Gynecology, University of Iowa Health Care, Iowa City, IA, USA.

Institute for Clinical and Translational Science, University of Iowa, Iowa City, IA, USA.

出版信息

J Clin Transl Sci. 2025 Mar 19;9(1):e76. doi: 10.1017/cts.2025.43. eCollection 2025.

Abstract

Precision or "Personalized Medicine" and "Big Data" are growing trends in the biomedical research community and highlight an increased focus on access to larger datasets to effectively explore disease processes at the molecular level versus the previously common one-size-fits all approach. This focus necessitated a local transition from independent lab and siloed projects to a single software application utilizing a common ontology to create access to data from multiple repositories. Use of a common system has allowed for increased ease of collaboration and access to quality biospecimens that are extensively annotated with clinical, molecular, and patient associated data. The software needed to function at an enterprise level while continuing to allow investigators the autonomy and security access they desire. To identify a solution, a working group comprised of representation from independent repositories and areas of research focus across departments was established and responsible for review and implementation of an enterprise-wide biospecimen management system. Central to this process was the creation of a unified vocabulary across all repositories, including consensus around source of truth, standardized field definitions, and shared terminology.

摘要

精准医学或“个性化医疗”以及“大数据”是生物医学研究领域不断发展的趋势,这凸显了人们越来越关注获取更大的数据集,以便在分子水平上有效地探索疾病过程,而不是以往常见的一刀切方法。这种关注使得当地从独立实验室和孤立项目向利用通用本体的单一软件应用程序转变,以便从多个存储库中获取数据。使用通用系统提高了协作的便利性,并能够获取带有临床、分子和患者相关数据的大量注释的优质生物样本。该软件需要在企业层面运行,同时继续允许研究人员获得他们想要的自主权和安全访问权限。为了找到解决方案,成立了一个由各独立存储库以及跨部门研究重点领域的代表组成的工作组,负责审查和实施企业范围的生物样本管理系统。这一过程的核心是在所有存储库中创建统一的词汇表,包括围绕真相来源、标准化字段定义和共享术语达成共识。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5084/12083205/efe6c36a2bed/S2059866125000433_fig1.jpg

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