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检测序列标签位点以揭示父子对中多拷贝Y染色体短串联重复序列的多步突变机制。

Detection of sequence-tagged sites to reveal mechanisms of multi-step mutations at multi-copy Y-STRs in father-son pairs.

作者信息

Zhang Longnian, Jing Guangxin, Liu Ze, Wu Haiduo, Liu Dahua, Yu Shaobo, Ren Fu, Guo Fei

机构信息

Criminal Investigation Police University of China, Shenyang, Liaoning, 110854, PR China.

Heyuan Public Security Forensic Science Center, Heyuan, Guangdong, 517000, PR China.

出版信息

Int J Legal Med. 2025 May 22. doi: 10.1007/s00414-025-03506-1.

DOI:10.1007/s00414-025-03506-1
PMID:40402227
Abstract

The case report demonstrates that co-examining various forensic markers with different technologies can strengthen the connection between father-son pairs with multi-step mutations observed at multi-copy Y-chromosomal short tandem repeats (Y-STRs). We detect 33 autosomal STRs and 94 identity-informative single nucleotide polymorphisms (iSNPs) using capillary electrophoresis (CE) and/or next-generation sequencing (NGS) to confirm the relationship within pedigrees. Meanwhile, this study reveals that the mechanisms behind the mutations observed in these cases involve STR slippage (identified using NGS or Sanger sequencing methods) and/or chromosomal structure rearrangement (identified using sequence-tagged site analyses). Such rearrangement can result in one or more step mutations. Loci within the same rearrangement region will also be linked and 'mutate' simultaneously. The chromosomal structure rearrangement rate observed in this study is calculated as 0.0012 (95% confidence interval: 0.0002-0.0034) in Northern Han Chinese.

摘要

该病例报告表明,采用不同技术联合检测多种法医标记物,可加强在多拷贝Y染色体短串联重复序列(Y-STR)处观察到多步突变的父子对之间的联系。我们使用毛细管电泳(CE)和/或下一代测序(NGS)检测33个常染色体STR和94个身份信息单核苷酸多态性(iSNP),以确认家系内的亲缘关系。同时,本研究揭示这些病例中观察到的突变背后的机制涉及STR滑动(使用NGS或桑格测序方法鉴定)和/或染色体结构重排(使用序列标签位点分析鉴定)。这种重排可导致一步或多步突变。同一重排区域内的基因座也将连锁并同时“突变”。本研究中观察到的汉族北方人群的染色体结构重排率计算为0.0012(95%置信区间:0.0002 - 0.0034)。

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本文引用的文献

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Analysis of rapidly mutating Y-STRs enables almost complete discrimination of unrelated and related males from the African continent.对快速突变的Y染色体短串联重复序列(Y-STR)进行分析,几乎能够完全区分来自非洲大陆的无关男性和有亲缘关系的男性。
Forensic Sci Int Genet. 2024 Nov;73:103127. doi: 10.1016/j.fsigen.2024.103127. Epub 2024 Aug 14.
2
Easykin: a flexible and user-friendly online tool for forensic kinship testing and missing person identification.Easykin:一款灵活易用的在线工具,用于法医亲属关系测试和失踪人员识别。
Int J Legal Med. 2023 Nov;137(6):1671-1681. doi: 10.1007/s00414-023-03083-1. Epub 2023 Sep 25.
3
Sequence-based mutation patterns at 41 Y chromosomal STRs in 2 548 father-son pairs.
2548对父子中41个Y染色体短串联重复序列基于序列的突变模式。
Forensic Sci Res. 2023 May 31;8(2):152-162. doi: 10.1093/fsr/owad016. eCollection 2023 Jun.
4
Three mutations at a Y-STR haplotype defy a paternal half-brothers kinship case analysis.三个 Y-STR 单倍型突变否定了父子半同胞的亲缘关系案例分析。
Int J Legal Med. 2023 Jul;137(4):1017-1022. doi: 10.1007/s00414-023-03027-9. Epub 2023 May 20.
5
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