Bertoli-Avella Aida M, Ganoza Christian A, Ferreira Mariana, Najafi Maryam, Polla Daniel L, Kandaswamy Krishna, Tripolszki Kornelia, Bauer Peter, Pinto Basto Jorge
Centogene GmbH, Rostock, Mecklenburg-Vorpommern, Germany
Centogene GmbH, Rostock, Mecklenburg-Vorpommern, Germany.
J Med Genet. 2025 Jul 21;62(8):536-539. doi: 10.1136/jmg-2024-110556.
We analysed rare variants in the non-coding gene as a potential cause of neurodevelopmental disorder (NDD) and intellectual disability (ID) in a large cohort of individuals enriched for parental consanguinity.Genome sequencing (GS) data from 22 928 individuals in our Biodatabank were queried for rare, monoallelic variants in From these, 4918 patients presented with NDD/ID. Human Phenotype Ontology (HPO)-encoded clinical information was extracted and analysed using the ontologyX R package.Nearly 50% of the 4918 patients with NDD/ID reported parental consanguinity. Eight relevant heterozygous variants were identified in 28 patients. n.64_65insT was the most frequently detected variant (20 patients, 71%), while the remaining variants were found in 1 or 2 patients each (n.65A>G, n.66A>G, n.67A>G, n.70T>C, n.76C>T, n.95C>G and n.135A>C). Four variants are novel or ultra-rare, and two of them are in the 3' stem loops. HPO-based analysis revealed a consistent syndromic phenotype characterised by NDD, abnormal brain morphology, hypotonia, global developmental delay, microcephaly, seizures, atypical behaviour and facial dysmorphism. variants accounted for approximately 0.55% of NDD/ID cases in our full cohort, and 0.25% in the subset of consanguineous patients (all genetic causes included).This study underscores the significance of as a major genetic cause of NDD/ID, extending its relevance to consanguineous patients, where recessive disorders are often suspected. We advocate for the re-evaluation of existing GS data to uncover potential diagnoses and emphasise the importance of GS as a first-tier diagnostic test.
我们在一大群有近亲婚配情况的个体中,分析了非编码基因中的罕见变异,将其作为神经发育障碍(NDD)和智力残疾(ID)的潜在病因。我们查询了生物数据库中22928名个体的基因组测序(GS)数据,以寻找该基因中的罕见单等位基因变异。其中,4918名患者表现出NDD/ID。使用ontologyX R软件包提取并分析了人类表型本体论(HPO)编码的临床信息。在4918名NDD/ID患者中,近50%报告有近亲婚配情况。在28名患者中鉴定出8个相关的杂合变异。n.64_65insT是最常检测到的变异(20名患者,71%),而其余变异各在1或2名患者中发现(n.65A>G、n.66A>G、n.67A>G、n.70T>C、n.76C>T、n.95C>G和n.135A>C)。4个变异是新的或超罕见的,其中2个位于3'茎环。基于HPO的分析揭示了一种一致的综合征表型,其特征为NDD、脑形态异常、肌张力减退、全面发育迟缓、小头畸形、癫痫发作、非典型行为和面部畸形。这些变异在我们整个队列的NDD/ID病例中约占0.55%,在近亲婚配患者亚组中占0.25%(包括所有遗传病因)。本研究强调了该基因作为NDD/ID主要遗传病因的重要性,将其相关性扩展到常被怀疑患有隐性疾病的近亲婚配患者。我们主张重新评估现有的GS数据以发现潜在诊断,并强调GS作为一线诊断测试的重要性。