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创新的环核苷酸 - 核苷2',3'-七元环二膦酸酯衍生物。理论可行性、合成与性质。

Innovative Cyclic Nucleotides - Nucleoside 2',3'-Seven-Membered Cyclic Diphosphonate Derivatives. Theoretical Feasibility, Synthesis, and Properties.

作者信息

Liberman Sveta, Bobot Lea, Ben Daniel Hadar T, Major Dan T, Fischer Bilha

机构信息

Department of Chemistry, Bar Ilan University, Ramat Gan, 5290002, Israel.

出版信息

Chemistry. 2025 Jun 26;31(36):e202501228. doi: 10.1002/chem.202501228. Epub 2025 Jun 1.

Abstract

7-membered cyclic nucleotides have remained unknown despite the natural abundance of their 5- and 6-membered counterparts. Here, we report the first synthesis of 2',3'-cyclic nucleosides (tetrathio)diphosphonate (2',3'-cNTDPs) by a rapid one-step, regioselective, and protection-free reaction of U, A, C, I, and G, with methylene-bis(1,3,2-dithia-phospholane-2-sulfide) (DTPS). The reaction proceeds instantaneously, even at -35 °C, resulting in the quantitative conversion of methylene-bis-DTPS. Density functional theory (DFT) calculations of ∆G confirm the synthetic feasibility and regioselectivity, attributing the efficiency to strain release in DTPS rings and entropic gain from thiirane elimination. The resulting 2',3'-cNTDPs exhibited remarkable hydrolytic stability and greater solution structural rigidity than free nucleosides.

摘要

尽管五元环和六元环的环状核苷酸在自然界中广泛存在,但七元环的环状核苷酸却一直不为人知。在此,我们报道了通过尿苷(U)、腺苷(A)、胞苷(C)、肌苷(I)和鸟苷(G)与亚甲基双(1,3,2-二硫代磷杂环戊烷-2-硫化物)(DTPS)进行快速一步、区域选择性且无需保护的反应,首次合成了2',3'-环核苷(四硫代)二磷酸酯(2',3'-cNTDPs)。该反应即使在-35°C时也能瞬间进行,实现了亚甲基双-DTPS的定量转化。密度泛函理论(DFT)对∆G的计算证实了合成的可行性和区域选择性,将其效率归因于DTPS环中的应变释放以及硫杂环丙烷消除带来的熵增。所得到的2',3'-cNTDPs表现出显著的水解稳定性,并且比游离核苷具有更高的溶液结构刚性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1849/12202838/b75fac17fd3d/CHEM-31-e202501228-g002.jpg

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