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豆甾醇作为宫颈癌潜在治疗剂的计算研究:来自密度泛函理论(DFT)和分子对接研究的见解

Computational investigation of stigmasterol as a potential therapeutic agent for cervical cancer: insights from density functional theory (DFT) and molecular docking studies.

作者信息

Sunday Udoh Ekaette, Stephanie Muofunanya I, Otuonye Favour, Oluwadamilola Dickson, Lazarus Augusta A

机构信息

Department of Pharmacology, University of Calabar, Calabar, Nigeria.

Department of Genetics and Biotechnology, University of Calabar, Calabar, Nigeria.

出版信息

In Silico Pharmacol. 2025 May 24;13(2):77. doi: 10.1007/s40203-025-00361-1. eCollection 2025.

Abstract

UNLABELLED

Cervical cancer an appalling disease common amongst women worldwide, caused by human papillomavirus (HPV) with 80% increasing cases in developing countries, is reported to be persistent despite the various treatment measures. Hence, this research explores the properties of stigmasterol (SML), a biological active compound derived from plant, as a drug agent for treatment of cervical cancer via density functional theory (DFT) studies and molecular docking investigation. Here, five key proteins were selected (for 4LEO, 7X8O, 5N2F, 4P7U and 2N5R) for in silico molecular docking study with SML. The DFT at ωB97XD/6-311++G (2d, 2p) level of theory was utilized and optimization of the compound was carried out in four different solvent phases, viz; acetone, ethanol, water, and gas to ascertain the level of reactivity and stability of the compound. The HOMO-LUMO energy gaps exhibited by acetone, ethanol, gas, and water were: 9.4128 eV, 9.4134 eV, 9.3140 eV, and 9.4164 eV, respectively. Interestingly, the resulting binding affinities for SML-protein interaction for 4LEO, 7X8O, 5N2F, 4P7U and 2N5R showed notable binding affinities of - 7.6 kcal/mol, - 5.2 kcal/mol, - 6.1 kcal/mol, - 5.2 kcal/mol and - 5.0 kcal/mol, respectively, as compared to the binding affinities (- 5.2 to - 7.6 kcal/mol) recorded for proteins-standard drugs interaction. The Non-covalent interactions (NCI) analysis showed predominately, van der Waals interactions in all the phases. This investigation suggest that SML can be used in the treatment and management of cervical cancer and requires further investigation.

SUPPLEMENTARY INFORMATION

The online version contains supplementary material available at 10.1007/s40203-025-00361-1.

摘要

未标注

宫颈癌是一种在全球女性中常见的可怕疾病,由人乳头瘤病毒(HPV)引起,在发展中国家病例增加了80%,据报道,尽管采取了各种治疗措施,该疾病仍持续存在。因此,本研究通过密度泛函理论(DFT)研究和分子对接研究,探索了从植物中提取的生物活性化合物豆甾醇(SML)作为治疗宫颈癌的药物的特性。在此,选择了五个关键蛋白(针对4LEO、7X8O、5N2F、4P7U和2N5R)与SML进行计算机模拟分子对接研究。采用ωB97XD/6-311++G(2d,2p)理论水平的DFT,并在四种不同的溶剂相中对化合物进行优化,即丙酮、乙醇、水和气相,以确定化合物的反应活性和稳定性水平。丙酮、乙醇、气相和水表现出的最高占据分子轨道-最低未占据分子轨道(HOMO-LUMO)能隙分别为9.4128电子伏特、9.4134电子伏特、9.3140电子伏特和9.4164电子伏特。有趣的是,与蛋白质-标准药物相互作用记录的结合亲和力(-5.2至-7.6千卡/摩尔)相比,SML与4LEO、7X8O、5N2F、4P7U和2N5R的蛋白质相互作用产生的结合亲和力分别显示出显著的-7.6千卡/摩尔、-5.2千卡/摩尔、-6.1千卡/摩尔、-5.2千卡/摩尔和-5.0千卡/摩尔。非共价相互作用(NCI)分析表明,在所有相中主要是范德华相互作用。这项研究表明,SML可用于宫颈癌的治疗和管理,需要进一步研究。

补充信息

在线版本包含可在10.1007/s40203-025-00361-1获取的补充材料。

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