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基于基因组学和分子动力学的源自红树林的新型抗耐甲氧西林金黄色葡萄球菌肽FN33

Novel Anti-MRSA Peptide from Mangrove-Derived FN33 Supported by Genomics and Molecular Dynamics.

作者信息

Sermkaew Namfa, Atipairin Apichart, Boonruamkaew Phetcharat, Krobthong Sucheewin, Aonbangkhen Chanat, Uchiyama Jumpei, Yingchutrakul Yodying, Songnaka Nuttapon

机构信息

School of Pharmacy, Walailak University, Thasala, Nakhon Si Thammarat 80160, Thailand.

Drug and Cosmetics Excellence Center, Walailak University, Thasala, Nakhon Si Thammarat 80160, Thailand.

出版信息

Mar Drugs. 2025 May 14;23(5):209. doi: 10.3390/md23050209.

Abstract

Antimicrobial resistance (AMR) is a global health threat, with methicillin-resistant (MRSA) being one of the major resistant pathogens. This study reports the isolation of a novel mangrove-derived bacterium, FN33, as identified through genome analysis and the discovery of a new anionic antimicrobial peptide (AMP) exhibiting anti-MRSA activity. The AMP was composed of 23 amino acids, which were elucidated as NH-Glu-Gly-Gly-Cys-Gly-Val-Asp-Thr-Trp-Gly-Cys-Leu-Thr-Pro-Cys-His-Cys-Asp-Leu-Phe-Cys-Thr-Thr-COOH. The minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) for MRSA were 8 µg/mL and 16 µg/mL, respectively. FN33 AMP induced cell membrane permeabilization, suggesting a membrane-disrupting mechanism. The AMP remained stable at 30-40 °C but lost activity at higher temperatures and following exposure to proteases, surfactants, and extreme pH. All-atom molecular dynamics simulations showed that the AMP adopts a β-sheet structure upon membrane interaction. These findings suggest that FN33 is a promising source of novel antibacterial agents against MRSA, supporting alternative strategies for drug-resistant infections.

摘要

抗菌耐药性(AMR)是一种全球健康威胁,耐甲氧西林金黄色葡萄球菌(MRSA)是主要的耐药病原体之一。本研究报告了一种新的源自红树林的细菌FN33的分离,通过基因组分析鉴定,并发现了一种具有抗MRSA活性的新型阴离子抗菌肽(AMP)。该AMP由23个氨基酸组成,其序列为NH-Glu-Gly-Gly-Cys-Gly-Val-Asp-Thr-Trp-Gly-Cys-Leu-Thr-Pro-Cys-His-Cys-Asp-Leu-Phe-Cys-Thr-Thr-COOH。对MRSA的最小抑菌浓度(MIC)和最小杀菌浓度(MBC)分别为8μg/mL和16μg/mL。FN33 AMP诱导细胞膜通透性增加,提示其作用机制为破坏细胞膜。该AMP在30-40°C下保持稳定,但在较高温度下以及暴露于蛋白酶、表面活性剂和极端pH值后失去活性。全原子分子动力学模拟表明,该AMP与膜相互作用时形成β-折叠结构。这些发现表明,FN33是一种有前景的抗MRSA新型抗菌剂来源,为耐药感染提供了替代策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/31e7/12113356/310059b04791/marinedrugs-23-00209-g001.jpg

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