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对源自患有ABCA4突变的斯塔加特病患者的视网膜类器官进行纵向单细胞RNA测序。

Longitudinal scRNA-seq of retinal organoids derived from Stargardt disease patient with ABCA4 mutation.

作者信息

Zhao Yingke, Cheng Yun, Li Ting, Wu Jiawen, Li Chenchen, Zhang Shenghai, Wu Jihong

机构信息

Department of Ophthalmology, Eye and ENT Hospital, College of Medicine, Fudan University, Shanghai, 200000, China.

Shanghai Key Laboratory of Visual Impairment and Restoration, Science and Technology Commission of Shanghai Municipality, Shanghai, 200000, China.

出版信息

Sci Data. 2025 May 27;12(1):878. doi: 10.1038/s41597-025-05079-5.

DOI:10.1038/s41597-025-05079-5
PMID:40425564
Abstract

Stargardt disease (STGD), predominantly caused by mutations in the ABCA4 gene, is a leading cause of inherited retinal degeneration. Although several lines of mice expressing disease-causing variants have been produced, mice due to the lack of macular may not be the perfect model to mimic the characteristics of STGD. To address this knowledge gap, we generated retinal organoids from patient-derived induced pluripotent stem cells (iPSCs) harboring ABCA4 mutations and performed biological validation. The generated retinal organoids were subjected to single-cell RNA sequencing (scRNA-seq) at major developmental stages (40, 90, 150, 200, and 260 days), and we additionally compared the transcriptomics with our recently published control retinal organoids to further confirm the reliability of the dataset. By using iPSCs carrying most common variant in Chinese STGD patients, the dataset not only provides a powerful resource for studying STGD, but also offers novels insight into the developmental mechanisms underlying ABCA4-associated pathological changes in the retinal organoid system.

摘要

斯塔加特病(STGD)主要由ABCA4基因突变引起,是遗传性视网膜变性的主要原因。尽管已经培育出了几种表达致病变体的小鼠品系,但由于缺乏黄斑,这些小鼠可能不是模拟STGD特征的完美模型。为了填补这一知识空白,我们从携带ABCA4突变的患者来源的诱导多能干细胞(iPSC)中生成了视网膜类器官,并进行了生物学验证。在主要发育阶段(40、90、150、200和260天)对生成的视网膜类器官进行单细胞RNA测序(scRNA-seq),此外,我们还将转录组学与我们最近发表的对照视网膜类器官进行了比较,以进一步确认数据集的可靠性。通过使用携带中国STGD患者中最常见变体的iPSC,该数据集不仅为研究STGD提供了强大的资源,还为视网膜类器官系统中ABCA4相关病理变化的发育机制提供了新的见解。

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Sci Data. 2025 May 27;12(1):878. doi: 10.1038/s41597-025-05079-5.
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本文引用的文献

1
Distinct mouse models of Stargardt disease display differences in pharmacological targeting of ceramides and inflammatory responses.不同的斯塔加特病小鼠模型在神经酰胺的药物靶向和炎症反应方面存在差异。
Proc Natl Acad Sci U S A. 2023 Dec 12;120(50):e2314698120. doi: 10.1073/pnas.2314698120. Epub 2023 Dec 8.
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Stargardt macular dystrophy and therapeutic approaches.斯特格黄斑营养不良及治疗方法。
Br J Ophthalmol. 2024 Mar 20;108(4):495-505. doi: 10.1136/bjo-2022-323071.
3
Demonstration of the pathogenicity of a common non-exomic mutation in ABCA4 using iPSC-derived retinal organoids and retrospective clinical data.
利用 iPSC 衍生的视网膜类器官和回顾性临床数据证明 ABCA4 常见非外显子突变的致病性。
Hum Mol Genet. 2024 Aug 6;33(16):1379-1390. doi: 10.1093/hmg/ddad176.
4
Dictionary learning for integrative, multimodal and scalable single-cell analysis.基于字典学习的综合、多模态和可扩展的单细胞分析。
Nat Biotechnol. 2024 Feb;42(2):293-304. doi: 10.1038/s41587-023-01767-y. Epub 2023 May 25.
5
Cell-autonomous lipid-handling defects in Stargardt iPSC-derived retinal pigment epithelium cells.Stargardt 型 iPSC 来源的视网膜色素上皮细胞的细胞自主脂质处理缺陷。
Stem Cell Reports. 2022 Nov 8;17(11):2438-2450. doi: 10.1016/j.stemcr.2022.10.001. Epub 2022 Oct 27.
6
Structure and function of ABCA4 and its role in the visual cycle and Stargardt macular degeneration.ABCA4 的结构与功能及其在视觉循环和 Stargardt 黄斑变性中的作用。
Prog Retin Eye Res. 2022 Jul;89:101036. doi: 10.1016/j.preteyeres.2021.101036. Epub 2021 Dec 23.
7
Vitamin A cycle byproducts impede dark adaptation.维生素 A 循环副产物会阻碍暗适应。
J Biol Chem. 2021 Sep;297(3):101074. doi: 10.1016/j.jbc.2021.101074. Epub 2021 Aug 12.
8
Generation of an induced pluripotent stem cell line from a patient with Stargardt disease caused by biallelic c.[5461-10T>C;5603A>T];[6077T>C] mutations in the ABCA4 gene.从一位 ABCA4 基因双等位基因突变 c.[5461-10T>C;5603A>T];[6077T>C]引起的斯塔加特病患者中诱导产生多能干细胞系。
Stem Cell Res. 2021 Jul;54:102439. doi: 10.1016/j.scr.2021.102439. Epub 2021 Jun 24.
9
Generation of two induced pluripotent stem cell lines from a patient with Stargardt disease caused by compound heterozygous mutations in the ABCA4 gene.从一位 ABCA4 基因突变的复合杂合子导致 Stargardt 病患者中生成两个诱导多能干细胞系。
Stem Cell Res. 2021 Jul;54:102448. doi: 10.1016/j.scr.2021.102448. Epub 2021 Jun 24.
10
Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution.人类视网膜及其类器官的细胞类型解析
Cell. 2020 Sep 17;182(6):1623-1640.e34. doi: 10.1016/j.cell.2020.08.013.