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中国不同亚洲象种群肠道微生物群落结构的比较分析及其与饮食的相关性

Comparative Analysis of Gut Microbiome Community Structures in Different Populations of Asian Elephants in China and Their Correlation with Diet.

作者信息

Guo Qiang, Zhang Wenping, Xu Chenyang, Li Xu, Wang Bin, Xiong Chaoyong, Duan Wenguang, Luo Tingting, Wang Weibin, Zhou Jielong

机构信息

Key Laboratory of Conserving Wildlife with Small Populations in Yunnan/College of Biological Science and Food Engineering, Southwest Forestry University, Kunming 650224, China.

Key Laboratory of Forest Resources Conservation and Utilization in the Southwest Mountains of China, Ministry of Education, Southwest Forestry University, Kunming 650224, China.

出版信息

Genes (Basel). 2025 Apr 25;16(5):483. doi: 10.3390/genes16050483.

DOI:10.3390/genes16050483
PMID:40428305
Abstract

BACKGROUND

The interaction and co-evolution between the gut microbiome and the host play important roles in the host's physiology, nutrition, and health. Diet is considered an important driver of differences in the gut microbiota; however, research on the relationship between the gut microbiota and diet in Asian elephants remains limited.

METHODS

In this study, we explored the gut microbiota structure and its relationship with diet in different populations of Asian elephants through metagenomic sequencing, combined with previously published dietary data.

RESULTS

This study found that the dominant gut microbiota of Asian elephants includes the phyla Bacillota (29.85% in BP, 22.79% in RC, 21.89% in SM, 31.67% in ML, and 33.00% in NGH), Bacteroidota (25.25% in BP, 31.44% in RC, 16.44% in SM, 25.73% in ML, and 23.74% in NGH), and Spirochaetota (3.49% in BP, 6.18% in RC, 1.71% in SM, 2.69% in ML, and 3.52% in NGH), with significant differences in the gut microbiota among different populations. Correlation analysis between the gut microbiota and diet revealed that dietary diversity did not directly affect the alpha diversity of the gut microbiota. However, specific food types might play a key role in shaping the gut microbiota structure by regulating the abundance of certain microbiota.

CONCLUSIONS

This study reveals significant differences in the gut microbiota structure among different populations of Asian elephants and explores the impact of diet on the structure. The results provide foundational data for a deeper understanding of the gut microbiota structure of Asian elephants and offer important references for the scientific conservation and precise management strategies of this species.

摘要

背景

肠道微生物群与宿主之间的相互作用和共同进化在宿主的生理、营养和健康方面发挥着重要作用。饮食被认为是肠道微生物群差异的一个重要驱动因素;然而,关于亚洲象肠道微生物群与饮食之间关系的研究仍然有限。

方法

在本研究中,我们通过宏基因组测序,结合先前发表的饮食数据,探索了不同亚洲象种群的肠道微生物群结构及其与饮食的关系。

结果

本研究发现,亚洲象肠道中的优势微生物群包括厚壁菌门(BP中占29.85%,RC中占22.79%,SM中占21.89%,ML中占31.67%,NGH中占33.00%)、拟杆菌门(BP中占25.25%,RC中占31.44%,SM中占16.44%,ML中占25.73%,NGH中占23.74%)和螺旋体门(BP中占3.49%,RC中占6.18%,SM中占1.71%,ML中占2.69%,NGH中占3.52%),不同种群的肠道微生物群存在显著差异。肠道微生物群与饮食之间的相关性分析表明,饮食多样性并未直接影响肠道微生物群的α多样性。然而,特定食物类型可能通过调节某些微生物群的丰度在塑造肠道微生物群结构方面发挥关键作用。

结论

本研究揭示了不同亚洲象种群肠道微生物群结构的显著差异,并探讨了饮食对其结构的影响。研究结果为深入了解亚洲象肠道微生物群结构提供了基础数据,为该物种的科学保护和精准管理策略提供了重要参考。

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本文引用的文献

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EasyMetagenome: A user-friendly and flexible pipeline for shotgun metagenomic analysis in microbiome research.简易宏基因组:微生物组研究中用于鸟枪法宏基因组分析的用户友好型灵活流程。
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MicrobiomeStatPlots: Microbiome statistics plotting gallery for meta-omics and bioinformatics.微生物组统计绘图:用于元组学和生物信息学的微生物组统计绘图库。
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Characteristics of gut microbiota profiles in Asian elephants (Elephas maximus) with gastrointestinal disorders.
患有胃肠道疾病的亚洲象(Elephas maximus)肠道微生物群特征
Sci Rep. 2025 Jan 8;15(1):1327. doi: 10.1038/s41598-025-85495-0.
4
The links between dietary diversity and RNA virus diversity harbored by the great evening bat (Ia io).饮食多样性与大耳菊头蝠(Ia io)所携带的 RNA 病毒多样性之间的联系。
Microbiome. 2024 Nov 23;12(1):246. doi: 10.1186/s40168-024-01950-6.
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Large-scale metagenomic assembly provide new insights into the genetic evolution of gut microbiomes in plateau ungulates.大规模宏基因组组装为高原有蹄类动物肠道微生物组的遗传进化提供了新的见解。
NPJ Biofilms Microbiomes. 2024 Nov 6;10(1):120. doi: 10.1038/s41522-024-00597-3.
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Exploring the gut microbiota of healthy captive Asian elephants from various locations in Yunnan, China.探索来自中国云南不同地区健康圈养亚洲象的肠道微生物群。
Front Microbiol. 2024 Sep 27;15:1403930. doi: 10.3389/fmicb.2024.1403930. eCollection 2024.
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EasyAmplicon: An easy-to-use, open-source, reproducible, and community-based pipeline for amplicon data analysis in microbiome research.EasyAmplicon:一种易于使用、开源、可重复且基于社区的流程,用于微生物组研究中的扩增子数据分析。
Imeta. 2023 Jan 27;2(1):e83. doi: 10.1002/imt2.83. eCollection 2023 Feb.
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The role of host traits and geography in shaping the gut microbiome of insectivorous bats.宿主特征和地理因素在塑造食虫蝙蝠肠道微生物群方面的作用。
mSphere. 2024 Apr 23;9(4):e0008724. doi: 10.1128/msphere.00087-24. Epub 2024 Mar 21.
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Characteristics of gut microbiota in captive Asian elephants (Elephas maximus) from infant to elderly.圈养亚洲象(Elephas maximus)幼象至老年个体的肠道微生物群特征。
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