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甲硫氨酸腺苷转移酶2A(MAT2A)抑制剂潜在骨架的发现:虚拟筛选、合成及生物学评价

Discovery of Potential Scaffolds for Methionine Adenosyltransferase 2A (MAT2A) Inhibitors: Virtual Screening, Synthesis, and Biological Evaluation.

作者信息

Qi Chunchun, Yu Xinghui, Zuo Siyu, Han Pinsheng, An Ruonan, Zhang Yamin

机构信息

School of Medicine, Nankai University, Tianjin 300071, China.

Department of Hepatobiliary Surgery, Tianjin First Central Hospital, School of Medicine, Nankai University, Tianjin 300071, China.

出版信息

Molecules. 2025 May 12;30(10):2134. doi: 10.3390/molecules30102134.

DOI:10.3390/molecules30102134
PMID:40430308
Abstract

The inhibition of methionine adenosyltransferase 2A (MAT2A) in cancers harboring deletions of the methylthioadenosine phosphorylase (MTAP) gene induces synthetic lethality, making it a highly compelling strategy in the pursuit of precision anticancer therapeutics. In this study, structure-based computing methods were employed to discover novel scaffolds as potential MAT2A inhibitors. The most potent compound, , demonstrated inhibition of MAT2A with an IC of 0.43 μM, and showed antitumor effects against MTAP HCT116 cells with an IC of 1.4 μM. The identified compounds and their associated structural data could provide valuable insights for related drug discovery projects.

摘要

在携带甲硫腺苷磷酸化酶(MTAP)基因缺失的癌症中,抑制甲硫氨酸腺苷转移酶2A(MAT2A)可诱导合成致死,这使其成为追求精准抗癌疗法的极具吸引力的策略。在本研究中,采用基于结构的计算方法来发现作为潜在MAT2A抑制剂的新型骨架。最有效的化合物,其对MAT2A的抑制IC50为0.43 μM,对MTAP缺失的HCT116细胞的IC50为1.4 μM,显示出抗肿瘤作用。所鉴定的化合物及其相关结构数据可为相关药物发现项目提供有价值的见解。

相似文献

1
Discovery of Potential Scaffolds for Methionine Adenosyltransferase 2A (MAT2A) Inhibitors: Virtual Screening, Synthesis, and Biological Evaluation.甲硫氨酸腺苷转移酶2A(MAT2A)抑制剂潜在骨架的发现:虚拟筛选、合成及生物学评价
Molecules. 2025 May 12;30(10):2134. doi: 10.3390/molecules30102134.
2
Discovery of 2(1)-Quinoxalinone Derivatives as Potent and Selective MAT2A Inhibitors for the Treatment of MTAP-Deficient Cancers.发现2(1)-喹喔啉酮衍生物作为治疗MTAP缺陷型癌症的强效和选择性MAT2A抑制剂
J Med Chem. 2025 Jan 23;68(2):1222-1244. doi: 10.1021/acs.jmedchem.4c01635. Epub 2025 Jan 6.
3
Discovery of Novel Spirocyclic MAT2A Inhibitors Demonstrating High In Vivo Efficacy in MTAP-Null Xenograft Models.新型螺环MAT2A抑制剂的发现:在MTAP缺失的异种移植模型中显示出高体内疗效
J Med Chem. 2025 Feb 13;68(3):3480-3494. doi: 10.1021/acs.jmedchem.4c02634. Epub 2025 Jan 21.
4
Structure-Based Design and Optimization of Methionine Adenosyltransferase 2A (MAT2A) Inhibitors with High Selectivity, Brain Penetration, and In Vivo Efficacy.基于结构的甲硫氨酸腺苷转移酶 2A(MAT2A)抑制剂的设计与优化:高选择性、脑穿透性和体内疗效。
J Med Chem. 2024 Jun 13;67(11):9431-9446. doi: 10.1021/acs.jmedchem.4c00552. Epub 2024 May 31.
5
Combined inhibition of MTAP and MAT2a mimics synthetic lethality in tumor models via PRMT5 inhibition.在肿瘤模型中,MTAP和MAT2a的联合抑制通过抑制PRMT5模拟了合成致死性。
J Biol Chem. 2024 Jan;300(1):105492. doi: 10.1016/j.jbc.2023.105492. Epub 2023 Nov 23.
6
Discovery of AG-270, a First-in-Class Oral MAT2A Inhibitor for the Treatment of Tumors with Homozygous Deletion.AG-270 的发现,一种用于治疗同源缺失肿瘤的首创口服 MAT2A 抑制剂。
J Med Chem. 2021 Apr 22;64(8):4430-4449. doi: 10.1021/acs.jmedchem.0c01895. Epub 2021 Apr 8.
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Discovery of novel methionine adenosyltransferase 2A (MAT2A) allosteric inhibitors by structure-based virtual screening.基于结构的虚拟筛选发现新型蛋氨酸腺苷转移酶 2A(MAT2A)别构抑制剂。
Bioorg Med Chem Lett. 2023 Oct 1;94:129450. doi: 10.1016/j.bmcl.2023.129450. Epub 2023 Aug 15.
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MAT2A Inhibition Blocks the Growth of MTAP-Deleted Cancer Cells by Reducing PRMT5-Dependent mRNA Splicing and Inducing DNA Damage.MAT2A 抑制通过减少 PRMT5 依赖性 mRNA 剪接和诱导 DNA 损伤来阻断 MTAP 缺失型癌细胞的生长。
Cancer Cell. 2021 Feb 8;39(2):209-224.e11. doi: 10.1016/j.ccell.2020.12.010. Epub 2021 Jan 14.
9
Computer-aided design of a fluorescent MAT2A inhibitor for visualized cancer synthetic lethality.用于可视化癌症合成致死性的荧光MAT2A抑制剂的计算机辅助设计
Bioorg Chem. 2024 Sep;150:107582. doi: 10.1016/j.bioorg.2024.107582. Epub 2024 Jun 20.
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MAT2A inhibition combats metabolic and transcriptional reprogramming in cancer.MAT2A 抑制可对抗癌症的代谢和转录重编程。
Drug Discov Today. 2024 Nov;29(11):104189. doi: 10.1016/j.drudis.2024.104189. Epub 2024 Sep 19.

本文引用的文献

1
Computer-aided design of a fluorescent MAT2A inhibitor for visualized cancer synthetic lethality.用于可视化癌症合成致死性的荧光MAT2A抑制剂的计算机辅助设计
Bioorg Chem. 2024 Sep;150:107582. doi: 10.1016/j.bioorg.2024.107582. Epub 2024 Jun 20.
2
Structure-Based Design and Optimization of Methionine Adenosyltransferase 2A (MAT2A) Inhibitors with High Selectivity, Brain Penetration, and In Vivo Efficacy.基于结构的甲硫氨酸腺苷转移酶 2A(MAT2A)抑制剂的设计与优化:高选择性、脑穿透性和体内疗效。
J Med Chem. 2024 Jun 13;67(11):9431-9446. doi: 10.1021/acs.jmedchem.4c00552. Epub 2024 May 31.
3
Development of a Series of Pyrrolopyridone MAT2A Inhibitors.
吡咯并吡啶酮 MAT2A 抑制剂的系列研发。
J Med Chem. 2024 Mar 28;67(6):4541-4559. doi: 10.1021/acs.jmedchem.3c01860. Epub 2024 Mar 11.
4
Discovery of novel MAT2A inhibitors by an allosteric site-compatible fragment growing approach.通过变构位点兼容的片段生长方法发现新型 MAT2A 抑制剂。
Bioorg Med Chem. 2024 Feb 15;100:117633. doi: 10.1016/j.bmc.2024.117633. Epub 2024 Feb 5.
5
Discovery of novel methionine adenosyltransferase 2A (MAT2A) allosteric inhibitors by structure-based virtual screening.基于结构的虚拟筛选发现新型蛋氨酸腺苷转移酶 2A(MAT2A)别构抑制剂。
Bioorg Med Chem Lett. 2023 Oct 1;94:129450. doi: 10.1016/j.bmcl.2023.129450. Epub 2023 Aug 15.
6
Keep a watchful eye on methionine adenosyltransferases, novel therapeutic opportunities for hepatobiliary and pancreatic tumours.密切关注甲硫氨酸腺苷转移酶,肝胆胰肿瘤的新治疗机遇。
Biochim Biophys Acta Rev Cancer. 2022 Sep;1877(5):188793. doi: 10.1016/j.bbcan.2022.188793. Epub 2022 Sep 9.
7
Overview of Methionine Adenosyltransferase 2A (MAT2A) as an Anticancer Target: Structure, Function, and Inhibitors.甲硫氨酸腺苷转移酶 2A(MAT2A)作为抗癌靶点概述:结构、功能和抑制剂。
J Med Chem. 2022 Jul 28;65(14):9531-9547. doi: 10.1021/acs.jmedchem.2c00395. Epub 2022 Jul 7.
8
Targeting the methionine-methionine adenosyl transferase 2A- S -adenosyl methionine axis for cancer therapy.靶向蛋氨酸-蛋氨酸腺苷转移酶 2A- S -腺苷蛋氨酸轴治疗癌症。
Curr Opin Oncol. 2022 Sep 1;34(5):546-551. doi: 10.1097/CCO.0000000000000870. Epub 2022 Jul 5.
9
Leveraging Structure-Based Drug Design to Identify Next-Generation MAT2A Inhibitors, Including Brain-Penetrant and Peripherally Efficacious Leads.利用基于结构的药物设计来鉴定新一代 MAT2A 抑制剂,包括脑穿透和外周有效的先导化合物。
J Med Chem. 2022 Mar 24;65(6):4600-4615. doi: 10.1021/acs.jmedchem.1c01595. Epub 2022 Mar 16.
10
Fragment-Based Design of a Potent MAT2a Inhibitor and Evaluation in an MTAP Null Xenograft Model.基于片段的高效MAT2a抑制剂设计及在MTAP基因敲除异种移植模型中的评估
J Med Chem. 2021 May 27;64(10):6814-6826. doi: 10.1021/acs.jmedchem.1c00067. Epub 2021 Apr 26.