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具有强连接性的静电网络是一种用于调节Syk受体结合亲和力的磷酸传感器。

An electrostatic network with strong connectivity is a phospho-sensor for regulating affinity of Syk-receptor association.

作者信息

Hua Duy P, Kinnun Jacob J, Post Carol Beth

机构信息

Borch Department of Medicinal Chemistry and Molecular Pharmacology, Purdue University, West Lafayette, IN 47907.

Department of Biological Sciences, Markey Center for Structural Biology, and Purdue Center for Cancer Research, Purdue University, West Lafayette, IN 47907.

出版信息

Proc Natl Acad Sci U S A. 2025 Jun 3;122(22):e2421663122. doi: 10.1073/pnas.2421663122. Epub 2025 May 28.

Abstract

Spleen tyrosine kinase (Syk) mediates early signaling events in immunity by coupling membrane receptors to immune responses. Syk comprises a tandem SH2 (tSH2) regulatory module-two SH2 domains connected by a structured linker-and a kinase domain. The association of tSH2 with a doubly tyrosine-phosphorylated motif (dpITAM) on membrane immunoreceptors is central to controlling Syk's signaling activity. tSH2-dpITAM association is regulated by Y131-phosphorylation on linker A, distant from the Syk-immunoreceptor binding sites. A unique thermodynamic signature was reported to control this protein-protein interaction by phosphorylation, yet the molecular mechanism for the phosphorylation effect is unknown. Molecular dynamics (MD) simulation affords the detail needed to fill this knowledge deficiency. Long MD simulations revealed a highly correlated interdomain electrostatic network (distance correlation coefficients > 0.75) that is lost upon Y131-phosphorylation. Some of the strongly correlated interdomain pairs carry the same charge or are separated by distances greater than a salt-bridge pair. The strong interdomain connectivity accounts for the single, narrow free energy basin in the domain-structure conformational landscape for unphosphorylated tSH2. Linker phosphorylation disrupts this network and yields a broader free energy landscape with multiple networks formed by the same group of residues adopting alternative interdomain conformations. A salt dependence of NMR rotational tumbling times substantiates the electrostatic nature of tSH2 domain-domain coupling. Syk tandem SH2 is thus a sensor whose conformational plasticity is sensitive to Y131 phosphorylation. This phospho-sensing response provides the basis for an entropically driven regulatory mechanism that is so-far unique to Syk-immunoreceptor protein-protein association.

摘要

脾酪氨酸激酶(Syk)通过将膜受体与免疫反应偶联来介导免疫中的早期信号事件。Syk包含一个串联SH2(tSH2)调节模块——由一个结构化连接子连接的两个SH2结构域——和一个激酶结构域。tSH2与膜免疫受体上的双酪氨酸磷酸化基序(dpITAM)的结合对于控制Syk的信号活性至关重要。tSH2-dpITAM的结合受连接子A上远离Syk-免疫受体结合位点的Y131磷酸化调节。据报道,一种独特的热力学特征通过磷酸化来控制这种蛋白质-蛋白质相互作用,然而磷酸化作用的分子机制尚不清楚。分子动力学(MD)模拟提供了填补这一知识空白所需的细节。长时间的MD模拟揭示了一个高度相关的结构域间静电网络(距离相关系数>0.75),该网络在Y131磷酸化后消失。一些强相关的结构域间对带有相同电荷或被大于盐桥对的距离隔开。强结构域间连通性解释了未磷酸化tSH2在结构域结构构象景观中的单一、狭窄的自由能盆地。连接子磷酸化破坏了这个网络,并产生了一个更宽的自由能景观,同一组残基形成了多个采用替代结构域间构象的网络。NMR旋转翻滚时间的盐依赖性证实了tSH2结构域-结构域偶联的静电性质。因此,Syk串联SH2是一种传感器,其构象可塑性对Y131磷酸化敏感。这种磷酸化感应反应为一种熵驱动的调节机制提供了基础,这种机制是Syk-免疫受体蛋白质-蛋白质结合所特有的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4014/12146720/d5773d57a28d/pnas.2421663122fig01.jpg

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