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使用DNAzyme和分裂激活剂触发的CRISPR/Cas12a检测铅污染

Detection of lead contamination using DNAzyme and split activator-triggered CRISPR/Cas12a.

作者信息

Ren Kaiyuan, Ding Sheng, Shi Jinyi, Dong Juan, Du Feng, Tang Zhuo

机构信息

Natural Products Research Center, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China.

Clinical Medical College & Affiliated Hospital, Chengdu University, Chengdu, 610106, PR China.

出版信息

Talanta. 2025 Dec 1;295:128385. doi: 10.1016/j.talanta.2025.128385. Epub 2025 May 24.

DOI:10.1016/j.talanta.2025.128385
PMID:40435758
Abstract

Widespread Pb contamination represents a significant global health threat, particularly to children, highlighting the critical need for accurate monitoring and quantification to mitigate its adverse effects. The integration of DNAzymes with the programmable nuclease Cas12a has emerged as a promising approach for achieving specific and ultrasensitive detection of Pb. However, conventional DNAzyme-Cas12a systems suffer from inevitable background signals caused by dynamic instability between DNAzymes and Cas12a activators, which compromises analytical reliability. Herein, we present a novel DNAzyme-Cas12a assay featuring a split activator-based Cas12a switch. We demonstrate that the split activator containing a flap region effectively prevents Cas12a activation, thereby suppressing background noise induced by "DNA breathing" phenomena. Upon Pb-dependent activation of the GR-5 DNAzyme, the flap is cleaved, enabling reconstitution of the Cas12a activator and triggering trans-cleavage activity for signal amplification. This strategy achieves a detection limit of 615 pM for Pb while maintaining high specificity against interfering metal ions. Notably, the assay eliminates requirements for DNA amplification or nanoparticle modification, enabling rapid Pb detection at ambient temperature. The method demonstrated high accuracy in detecting contaminated tap and drinking water, suggesting its potential as a reliable analytical tool for monitoring Pb2+ contamination in practical samples.

摘要

广泛存在的铅污染对全球健康构成重大威胁,尤其是对儿童,这凸显了准确监测和量化以减轻其不利影响的迫切需求。将脱氧核酶与可编程核酸酶Cas12a整合已成为实现铅特异性和超灵敏检测的一种有前景的方法。然而,传统的脱氧核酶-Cas12a系统存在由脱氧核酶和Cas12a激活剂之间的动态不稳定性引起的不可避免的背景信号,这损害了分析可靠性。在此,我们提出了一种基于分裂激活剂的Cas12a开关的新型脱氧核酶-Cas12a检测方法。我们证明,含有一个侧翼区域的分裂激活剂有效地阻止了Cas12a的激活,从而抑制了由“DNA呼吸”现象引起的背景噪声。在铅依赖激活GR-5脱氧核酶后,侧翼被切割,使Cas12a激活剂得以重组,并触发反式切割活性以进行信号放大。该策略实现了对铅615 pM的检测限,同时对干扰金属离子保持高特异性。值得注意的是,该检测方法无需DNA扩增或纳米颗粒修饰,能够在室温下快速检测铅。该方法在检测受污染的自来水和饮用水时显示出高准确性,表明其作为监测实际样品中铅离子污染的可靠分析工具的潜力。

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