Shi Jia-Yu, Tang Yun-Rui, Li Hong-Lei, Xing Hai-Tao
College of Smart Agriculture/Institute of Special Plants, Chongqing University of Arts and Sciences, Chongqing, 402168, China.
Chongqing Key Laboratory for Germplasm Innovation of Special Aromatic Spice Plants, Chongqing University of Arts and Sciences, Chongqing, 402168, China.
BMC Genomics. 2025 May 30;26(1):548. doi: 10.1186/s12864-025-11461-9.
Ginger (Zingiber officinale Roscoe), a plant of considerable medicinal and culinary importance, frequently encounters adverse environmental challenges in cultivation. While BBX genes are recognized as fundamental regulators of plant growth and developmental processes, and responses to biotic and abiotic stresses, a comprehensive characterization of the BBX gene family in ginger has yet to be fully accomplished.
This study identified 31 members of the BBX gene family in ginger, designated as ZoBBXs, and analyzed their principal characteristics. A comprehensive analysis was conducted on the gene features, conserved protein motifs, chromosome location, phylogenetic relationships, and gene duplication events in ZoBBXs. Based on their gene structures, conserved domains, and motifs, the ZoBBX genes were categorized into five distinct groups. Additionally, the expression patterns of ZoBBXs were investigated across various developmental stages and in response to abiotic stresses, including ABA, cold, drought, heat, and salt treatments, utilizing RNA-seq data and qRT-PCR analysis. Notably, ZoBBX#11 and ZoBBX#27 were identified as potential key regulators of flowering, whereas ZoBBX#05 and ZoBBX#17 appear to play significant roles in stress response mechanisms.
This study provides a comprehensive analysis of the BBX gene family in ginger, laying the groundwork for future research into the roles of specific ZoBBX genes in ginger's growth, development, and tolerance to abiotic stresses.
生姜(Zingiber officinale Roscoe)是一种具有重要药用和烹饪价值的植物,在种植过程中经常面临不利的环境挑战。虽然BBX基因被认为是植物生长发育过程以及对生物和非生物胁迫响应的基本调节因子,但生姜中BBX基因家族的全面表征尚未完全完成。
本研究在生姜中鉴定出31个BBX基因家族成员,命名为ZoBBXs,并分析了它们的主要特征。对ZoBBXs的基因特征、保守蛋白基序、染色体定位、系统发育关系和基因复制事件进行了全面分析。根据其基因结构、保守结构域和基序,将ZoBBX基因分为五个不同的组。此外,利用RNA测序数据和qRT-PCR分析,研究了ZoBBXs在不同发育阶段以及对包括脱落酸、冷、干旱、热和盐处理在内的非生物胁迫的表达模式。值得注意的是,ZoBBX#11和ZoBBX#27被确定为开花的潜在关键调节因子,而ZoBBX#05和ZoBBX#17似乎在胁迫响应机制中发挥重要作用。
本研究对生姜中的BBX基因家族进行了全面分析,为今后研究特定ZoBBX基因在生姜生长、发育和非生物胁迫耐受性中的作用奠定了基础。