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系统发育推断揭示了循环肿瘤细胞簇中的克隆异质性。

Phylogenetic inference reveals clonal heterogeneity in circulating tumor cell clusters.

作者信息

Gremmelspacher David, Gawron Johannes, Szczerba Barbara M, Jahn Katharina, Castro-Giner Francesc, Kuipers Jack, Singer Jochen, Marass Francesco, Gvozdenovic Ana, Budinjas Selina, Pueschel Heike, Rentsch Cyrill A, Zippelius Alfred, Heinzelmann-Schwarz Viola, Kurzeder Christian, Weber Walter Paul, Rochlitz Christoph, Vetter Marcus, Beerenwinkel Niko, Aceto Nicola

机构信息

Department of Biology, Institute of Molecular Health Sciences, ETH Zurich, Zurich, Switzerland.

Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland.

出版信息

Nat Genet. 2025 Jun 2. doi: 10.1038/s41588-025-02205-2.

DOI:10.1038/s41588-025-02205-2
PMID:40457073
Abstract

Circulating tumor cell (CTC) clusters are highly efficient metastatic seeds in various cancers. Yet, their genetic heterogeneity and clonal architecture is poorly characterized. Using whole-exome sequencing coupled with phylogenetic inference from CTC clusters of patients with breast and prostate cancer, as well as mouse cancer models alongside barcode-mediated clonal tracking in vivo, we demonstrate oligoclonal composition of individual CTC clusters. These results improve our understanding of metastasis-relevant clonal dynamics.

摘要

循环肿瘤细胞(CTC)簇是多种癌症中高效的转移种子。然而,它们的基因异质性和克隆结构却鲜有描述。通过对乳腺癌和前列腺癌患者的CTC簇进行全外显子测序并结合系统发育推断,以及利用小鼠癌症模型和体内条形码介导的克隆追踪,我们证明了单个CTC簇的寡克隆组成。这些结果增进了我们对与转移相关的克隆动态的理解。

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1
Phylogenetic inference reveals clonal heterogeneity in circulating tumor cell clusters.系统发育推断揭示了循环肿瘤细胞簇中的克隆异质性。
Nat Genet. 2025 Jun 2. doi: 10.1038/s41588-025-02205-2.
2
Circulating tumor cell clusters are oligoclonal precursors of breast cancer metastasis.循环肿瘤细胞簇是乳腺癌转移的寡克隆前体。
Cell. 2014 Aug 28;158(5):1110-1122. doi: 10.1016/j.cell.2014.07.013.
3
Intratumor and circulating clonal heterogeneity shape the basis of precision breast cancer therapy.肿瘤内和循环克隆异质性构成了精准乳腺癌治疗的基础。
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4
Association of a novel circulating tumor DNA next-generating sequencing platform with circulating tumor cells (CTCs) and CTC clusters in metastatic breast cancer.新型循环肿瘤 DNA 下一代测序平台与转移性乳腺癌中循环肿瘤细胞 (CTC) 和 CTC 簇的关联。
Breast Cancer Res. 2019 Dec 4;21(1):137. doi: 10.1186/s13058-019-1229-6.
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Circulating Tumor Cell Clustering Shapes DNA Methylation to Enable Metastasis Seeding.循环肿瘤细胞聚类塑造 DNA 甲基化以促进转移定植。
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Generating human prostate cancer organoids from leukapheresis enriched circulating tumour cells.从白细胞分离术富集的循环肿瘤细胞生成人前列腺癌类器官。
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PMN-MDSCs Enhance CTC Metastatic Properties through Reciprocal Interactions via ROS/Notch/Nodal Signaling.PMN-MDSCs 通过 ROS/Notch/Nodal 信号的相互作用增强 CTC 的转移特性。
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Relevance of CTC Clusters in Breast Cancer Metastasis.循环肿瘤细胞簇在乳腺癌转移中的相关性。
Adv Exp Med Biol. 2020;1220:93-115. doi: 10.1007/978-3-030-35805-1_7.

本文引用的文献

1
Digoxin for reduction of circulating tumor cell cluster size in metastatic breast cancer: a proof-of-concept trial.地高辛用于缩小转移性乳腺癌循环肿瘤细胞簇大小:一项概念验证试验。
Nat Med. 2025 Apr;31(4):1120-1124. doi: 10.1038/s41591-024-03486-6. Epub 2025 Jan 24.
2
A Rare Subset of Primary Tumor Cells with Concomitant Hyperactivation of Extracellular Matrix Remodeling and dsRNA-IFN1 Signaling Metastasizes in Breast Cancer.乳腺癌中伴随细胞外基质重塑和 dsRNA-IFN1 信号同时过度激活的一类罕见原代肿瘤细胞转移。
Cancer Res. 2023 Jul 5;83(13):2155-2170. doi: 10.1158/0008-5472.CAN-22-2717.
3
DNA barcoding reveals ongoing immunoediting of clonal cancer populations during metastatic progression and immunotherapy response.
DNA 条形码揭示了克隆性癌症群体在转移进展和免疫治疗反应过程中的持续免疫编辑。
Nat Commun. 2022 Nov 7;13(1):6539. doi: 10.1038/s41467-022-34041-x.
4
The metastatic spread of breast cancer accelerates during sleep.乳腺癌的转移在睡眠期间加速。
Nature. 2022 Jul;607(7917):156-162. doi: 10.1038/s41586-022-04875-y. Epub 2022 Jun 22.
5
Spatial structure governs the mode of tumour evolution.空间结构决定肿瘤演化模式。
Nat Ecol Evol. 2022 Feb;6(2):207-217. doi: 10.1038/s41559-021-01615-9. Epub 2021 Dec 23.
6
Hypoxia Triggers the Intravasation of Clustered Circulating Tumor Cells.缺氧触发聚集的循环肿瘤细胞的血管内侵入。
Cell Rep. 2020 Sep 8;32(10):108105. doi: 10.1016/j.celrep.2020.108105.
7
Multi-cancer analysis of clonality and the timing of systemic spread in paired primary tumors and metastases.多癌种分析克隆性和配对原发性肿瘤及转移灶中系统性播散的时间。
Nat Genet. 2020 Jul;52(7):701-708. doi: 10.1038/s41588-020-0628-z. Epub 2020 May 18.
8
Genetic and epigenetic intratumor heterogeneity impacts prognosis of lung adenocarcinoma.肿瘤内遗传和表观遗传异质性影响肺腺癌的预后。
Nat Commun. 2020 May 18;11(1):2459. doi: 10.1038/s41467-020-16295-5.
9
Pulmonary venous circulating tumor cell dissemination before tumor resection and disease relapse.肿瘤切除前肺静脉循环肿瘤细胞播散与疾病复发。
Nat Med. 2019 Oct;25(10):1534-1539. doi: 10.1038/s41591-019-0593-1. Epub 2019 Oct 7.
10
Neutrophils escort circulating tumour cells to enable cell cycle progression.中性粒细胞护送循环肿瘤细胞以促进细胞周期进程。
Nature. 2019 Feb;566(7745):553-557. doi: 10.1038/s41586-019-0915-y. Epub 2019 Feb 6.