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使用密度泛函理论(DFT)、分子对接和寄生虫学研究对百里酚衍生的苯氧基乙酰胺衍生物进行合成与表征

Synthesis and characterization of thymol-derived phenoxy acetamide derivatives using DFT, molecular docking, and parasitological investigations.

作者信息

R Rabee Ahmed, M Soliman Saied, Abdel-Hamid Hamida, A Moneer Esraa, H Akl Sara, H Shahin Yahya, A Masoud Aliaa, Ghareeb Doaa Ahmad, Jaremko Mariusz, Emwas Abdul-Hamid, Sherif Mazen, Hagar Mohamed

机构信息

Chemistry Department, Faculty of Science, Alexandria University, Alexandria, Egypt.

Department of Medical Laboratory Technology, Faculty of Applied Health Sciences Technology, Pharos University in Alexandria, Alexandria, Egypt.

出版信息

Front Chem. 2025 May 21;13:1579923. doi: 10.3389/fchem.2025.1579923. eCollection 2025.

DOI:10.3389/fchem.2025.1579923
PMID:40469937
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12134901/
Abstract

Novel phenoxy acetamide derivatives based on a thymol moiety were synthesized for target parasitological investigation. The newly synthesized compounds, , , , , and , were synthesized as phenoxy acetamide derivatives containing a phthalimide or naphthalimide ring through a condensation reaction with various acid anhydrides. Their structures were confirmed based on spectral data derived through Fourier-transform infrared, proton and carbon-13 nuclear magnetic resonance, and elemental analyses. The parasitological, biochemical, and immunological activities of the compounds were measured. The screened compounds were subjected to molecular docking in the active site of CpCDPK1, in addition to analyses based on Lipinski's rule and SwissADME. The results showed that compounds , , and demonstrated promising antiparasitic activity, characterized by high gastrointestinal absorption and favorable drug-likeness profiles. Furthermore, and exhibited higher binding affinities than that of the reference drug. In practical assessments, compound exhibited the highest percentage reduction in oocyst counts (67%). Density functional theory calculations were performed to assess the thermodynamic stability, molecular geometry, frontier molecular orbital energy gaps, and molecular electrostatic potentials of compounds , , , , and .

摘要

基于百里香酚部分合成了新型苯氧基乙酰胺衍生物用于目标寄生虫学研究。新合成的化合物,即化合物1、2、3、4、5和6,通过与各种酸酐的缩合反应合成了含有邻苯二甲酰亚胺或萘二甲酰亚胺环的苯氧基乙酰胺衍生物。基于通过傅里叶变换红外光谱、质子和碳-13核磁共振光谱以及元素分析获得的光谱数据确认了它们的结构。测定了这些化合物的寄生虫学、生物化学和免疫学活性。除了基于Lipinski规则和SwissADME进行分析外,还对筛选出的化合物在CpCDPK1活性位点进行了分子对接。结果表明,化合物1、2和3表现出有前景的抗寄生虫活性,其特征在于高胃肠道吸收和良好的类药性质。此外,化合物4和5表现出比参考药物更高的结合亲和力。在实际评估中,化合物6表现出最高的卵囊计数减少百分比(67%)。进行了密度泛函理论计算以评估化合物1、2、3、4、5和6的热力学稳定性、分子几何结构、前沿分子轨道能隙和分子静电势。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd6/12134901/fa15588184ae/fchem-13-1579923-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd6/12134901/80e84df0258d/FCHEM_fchem-2025-1579923_wc_sch1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd6/12134901/c5169d8ac060/fchem-13-1579923-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd6/12134901/2a9b507fa793/fchem-13-1579923-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd6/12134901/b547a537efa2/fchem-13-1579923-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd6/12134901/42b716e15d17/fchem-13-1579923-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd6/12134901/86f8ab4df5e5/fchem-13-1579923-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd6/12134901/0801f84e80c8/fchem-13-1579923-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd6/12134901/fa15588184ae/fchem-13-1579923-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd6/12134901/80e84df0258d/FCHEM_fchem-2025-1579923_wc_sch1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd6/12134901/c5169d8ac060/fchem-13-1579923-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd6/12134901/2a9b507fa793/fchem-13-1579923-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd6/12134901/b547a537efa2/fchem-13-1579923-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd6/12134901/42b716e15d17/fchem-13-1579923-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd6/12134901/86f8ab4df5e5/fchem-13-1579923-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd6/12134901/0801f84e80c8/fchem-13-1579923-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd6/12134901/fa15588184ae/fchem-13-1579923-g007.jpg

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