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严重急性呼吸综合征冠状病毒2(SARS-CoV-2)的进化和传播可能受气候影响。

Evolution and spread of SARS-CoV-2 likely to be affected by climate.

作者信息

Bajaj Priyanka, Arya Prakash Chandra

机构信息

Molecular Biophysics Unit, Indian Institute of Science, Bangalore 560012, India.

Center for Earth Sciences, Indian Institute of Science, Bangalore 560012, India.

出版信息

Clim Chang Ecol. 2021 Jul;1:100005. doi: 10.1016/j.ecochg.2021.100005. Epub 2021 May 27.

DOI:10.1016/j.ecochg.2021.100005
PMID:40477567
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8154194/
Abstract

COVID-19 pandemic has been a subject of extensive study. However, it is still unclear why it was restricted to higher latitudes during the initial days and later cascaded in the tropics. Here, we analyzed 176 SARS-CoV-2 genomes across different climate zones and Köppen's climate that provided insights about within-species virus evolution and its relation to abiotic factors. Two genetically variant groups, named G1 and G2, were identified, well defined by four mutations. The G1 group (ancestor) is mainly restricted to warm and moist, temperate climate (Köppen's climate) while its descendent G2 group surpasses the climatic restrictions of G1, initially cascading into neighboring cold climate of higher latitudes and later into the hot climate of the tropics . It appears that the gradation of temperate climate to cold climate drives the evolution of G1 into the G2 variant group, which later adapted to tropical climate as well. It seems this virus followed an inverse latitudinal gradient in the beginning due to its preference towards temperate and cold climate . Our work elucidates virus evolutionary studies combined with climatic studies can provide crucial information about the pathogenesis and natural spreading pathways in such outbreaks, which is hard to achieve through individual studies. Mutational insights gained may help design an efficacious vaccine.

摘要

新冠疫情一直是广泛研究的主题。然而,目前仍不清楚为何在最初几天它局限于高纬度地区,而后又在热带地区迅速传播。在此,我们分析了不同气候区和柯本气候类型下的176个新冠病毒基因组,这些分析为种内病毒进化及其与非生物因素的关系提供了见解。我们识别出了两个基因变异组,分别命名为G1和G2,由四个突变明确界定。G1组(祖先组)主要局限于温暖湿润的温带气候(柯本气候类型),而其后代G2组突破了G1的气候限制,最初在高纬度地区向邻近的寒冷气候区传播,随后进入热带炎热气候区。似乎从温带气候到寒冷气候的渐变促使G1进化为G2变异组,而G2变异组后来也适应了热带气候。这种病毒似乎一开始由于偏好温带和寒冷气候而呈现出相反的纬度梯度。我们的研究表明,结合气候研究的病毒进化研究能够为此类疫情中的发病机制和自然传播途径提供关键信息,而单独的研究难以做到这一点。获得的突变见解可能有助于设计出有效的疫苗。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b963/8154194/6401c4c860d1/fx1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b963/8154194/6401c4c860d1/fx1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b963/8154194/6401c4c860d1/fx1_lrg.jpg

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