Leong Jason Cheok Kuan, Imaizumi Masaaki, Innan Hideki, Irie Naoki
Research Center for Integrative Evolutionary Science (RCIES), SOKENDAI, Hayama, Kanagawa, Japan.
Komaba Institute of Science, The University of Tokyo, Meguro, Tokyo, Japan.
Bioessays. 2025 Aug;47(8):e70027. doi: 10.1002/bies.70027. Epub 2025 Jun 8.
Organismal evolution is a process of discovering better-fitting phenotypes through trial and error across generations. This iterative process resembles learning processes, an analogy recognized since the 1950s. Recognizing this parallel suggests that evolutionary biology and machine learning can mutually benefit from each other; however, ample opportunities for research into their corresponding concepts remain. In this review, we aim to enhance predictive capabilities and theoretical developments in both fields by exploring their conceptual parallels through specific examples that have emerged from recent advances. We focus on the importance of moving beyond predictions by machine learning approaches for specific cases, but instead advocate for interpretable machine learning approaches for discovering common laws for predicting evolutionary outcomes. This approach seeks to establish a theoretical framework that can transform evolutionary science into a field enriched with predictive theory while also inspiring new modeling and algorithmic strategies in machine learning.
生物体的进化是一个通过多代试错来发现更适配表型的过程。这个迭代过程类似于学习过程,自20世纪50年代以来人们就认识到了这种类比关系。认识到这种相似性表明进化生物学和机器学习可以相互受益;然而,对它们相应概念的研究仍有大量机会。在本综述中,我们旨在通过近期进展中出现的具体例子来探索它们的概念相似性,从而提高这两个领域的预测能力和理论发展。我们强调超越机器学习方法对特定案例的预测的重要性,而是提倡使用可解释的机器学习方法来发现预测进化结果的通用规律。这种方法旨在建立一个理论框架,该框架可以将进化科学转变为一个充满预测理论的领域,同时也能激发机器学习中的新建模和算法策略。