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通过云基础设施重构助力罕见病精准医疗

Empowering Precision Medicine for Rare Diseases through Cloud Infrastructure Refactoring.

作者信息

Li Hui, Wang Jinlian, Liu Hongfang

机构信息

The McWilliams School of Biomedical Informatics, Houston, TX, USA.

出版信息

AMIA Jt Summits Transl Sci Proc. 2025 Jun 10;2025:300-311. eCollection 2025.

Abstract

Rare diseases affect approximately 1 in 11 Americans, yet their diagnosis remains challenging due to limited clinical evidence, low awareness, and lack of definitive treatments. Our project aims to accelerate rare disease diagnosis by developing a comprehensive informatics framework leveraging data mining, semantic web technologies, deep learning, and graph-based embedding techniques. However, our on-premises computational infrastructure faces significant challenges in scalability, maintenance, and collaboration. This study focuses on developing and evaluating a cloud-based computing infrastructure to address these challenges. By migrating to a scalable, secure, and collaborative cloud environment, we aim to enhance data integration, support advanced predictive modeling for differential diagnoses, and facilitate widespread dissemination of research findings to stakeholders, the research community, and the public and also proposed a facilitated through a reliable, standardized workflow designed to ensure minimal disruption and maintain data integrity for existing research project.

摘要

罕见病影响着约每11个美国人中的1个,但由于临床证据有限、认知度低以及缺乏确切的治疗方法,其诊断仍然具有挑战性。我们的项目旨在通过开发一个利用数据挖掘、语义网技术、深度学习和基于图的嵌入技术的综合信息学框架,来加速罕见病的诊断。然而,我们的本地计算基础设施在可扩展性、维护和协作方面面临重大挑战。本研究专注于开发和评估基于云的计算基础设施,以应对这些挑战。通过迁移到一个可扩展、安全且协作的云环境,我们旨在加强数据整合,支持用于鉴别诊断的先进预测建模,并促进研究结果向利益相关者、研究界以及公众的广泛传播,同时还提出通过一个可靠、标准化的工作流程来实现这一目标,该流程旨在确保对现有研究项目的干扰最小化并维护数据完整性。

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