Hoffmann Markus M, Smith Troy N, Buntkowsky Gerd
Department of Chemistry and Biochemistry, State University of New York Brockport, Brockport, NY 14420, USA.
Institute of Physical Chemistry, Technical University Darmstadt, Peter-Grünberg-Straße 8, D-64287 Darmstadt, Germany.
Molecules. 2025 Jun 4;30(11):2456. doi: 10.3390/molecules30112456.
n-Octanol and related ether alcohols are studied via molecular dynamics (MD) simulations using the two classical all-atom force fields OPLS-AA and CHARMM. The ether alcohols studied possess one ether functionality separated by varying n carbon atoms from the hydroxy group to elucidate how the positioning of the ether functionality affects intra- and intermolecular hydrogen bonding and, in turn, the physical properties of the studied alcohols. Important general trends observed from simulations with both force fields include the following: Intramolecular hydrogen bonding is majorly present in 3-butoxypropanol and 4-propoxybutanol (n = 3 and 4) while being only marginally present for 5-ethoxypentanol and 6-methoxyhexanol (n = 5 and 6) and absent in 1-hexyloxymethanol and 2-pentyloxyethanol (n = 1 and 2). The intramolecular hydrogen bonds formed by 3-butoxypropanol and 4-propoxybutanol are among the most stable ones of all present hydrogen bonds. Intermolecular hydrogen bonding is stronger between hydroxy groups (OH-OH) than between hydroxy and ether groups (OH-OE). An increased temperature causes a reduction in intermolecular OH-OH and OH-OE hydrogen bonding but a slight increase in intramolecular hydrogen bonding. A reduction in end-to-end distances at a higher temperature is also observed for all studied alcohols, which is likely a reflection of increased dihedral bond rotations. Hydrogen bonding extends mostly between just two molecules while hydrogen bonding networks are rare but do exist, involving, in some instances, up to 30 hydrogen bonds. Regardless of force field and temperature, the obtained radial distribution functions (RDFs) mostly show the same features at same distances that only vary in their intensity. 1-hexyloxymethanol forms a very specific and stable intermolecular double OH-OE hydrogen-bonded dimer. Similar double-hydrogen-bonded dimers can be found for the ether alcohols but are only significantly present for 2-pentyloxyethanol. Overall, the main difference between OPLS-AA and CHARMM is their quantitative prediction of the present hydrogen bonding speciation largely due to the stiffer dihedral potentials in OPLS-AA compared to the CHARMM force field. The simulations indicate that (a) the variations in densities are correlated to the reduced packing efficiency caused by intramolecular hydrogen bonding, (b) self-diffusion correlates with the stability of the intermolecular hydrogen bonds, and (c) the presence of hydrogen-bonded networks, although small in numbers, affect the viscosity.
通过分子动力学(MD)模拟,使用两种经典的全原子力场OPLS - AA和CHARMM对正辛醇及相关醚醇进行了研究。所研究的醚醇具有一个醚官能团,该官能团与羟基之间相隔不同数量的n个碳原子,以阐明醚官能团的位置如何影响分子内和分子间的氢键,进而影响所研究醇类的物理性质。从使用这两种力场的模拟中观察到的重要一般趋势如下:分子内氢键主要存在于3 - 丁氧基丙醇和4 - 丙氧基丁醇(n = 3和4)中,而在5 - 乙氧基戊醇和6 - 甲氧基己醇(n = 5和6)中仅少量存在,在1 - 己氧基甲醇和2 - 戊氧基乙醇(n = 1和2)中不存在。3 - 丁氧基丙醇和4 - 丙氧基丁醇形成的分子内氢键是所有现有氢键中最稳定的之一。羟基之间(OH - OH)的分子间氢键比羟基与醚基之间(OH - OE)的更强。温度升高会导致分子间OH - OH和OH - OE氢键减少,但分子内氢键略有增加。对于所有研究的醇类,在较高温度下还观察到端到端距离缩短,这可能反映了二面角键旋转增加。氢键大多仅在两个分子之间延伸,而氢键网络很少见,但确实存在,在某些情况下涉及多达30个氢键。无论力场和温度如何,所获得的径向分布函数(RDFs)在相同距离处大多呈现相同特征,只是强度有所不同。1 - 己氧基甲醇形成一种非常特殊且稳定的分子间双OH - OE氢键二聚体。类似的双氢键二聚体也可以在醚醇中找到,但仅在2 - 戊氧基乙醇中显著存在。总体而言,OPLS - AA和CHARMM之间的主要区别在于它们对现有氢键形态的定量预测,这主要是由于与CHARMM力场相比,OPLS - AA中的二面角势能更刚性。模拟表明:(a)密度变化与分子内氢键导致的堆积效率降低相关;(b)自扩散与分子间氢键的稳定性相关;(c)氢键网络的存在,尽管数量较少,但会影响粘度。