Zhang Ao, Zhang Qiulin, Cao Man
Department of Nephrology, Guangdong Provincial Second Hospital of Traditional Chinese Medicine, No. 60, Hengfu Road, Guangzhou, 510000, Guangdong, China.
Guangdong Provincial Engineering Technology Research Institute of Traditional Chinese Medicine, Guangzhou, 510000, Guangdong, China.
Int Urol Nephrol. 2025 Jun 13. doi: 10.1007/s11255-025-04593-0.
Previous studies have extensively reported some alterations in mitochondrial-related proteins in patients with chronic kidney disease (CKD). Herein, we used a two-sample Mendelian randomization (MR) to investigate the potential causal relationship between serum mitochondrial-related protein function and CKD.
The data related to CKD and mitochondrial 2,4-dienoyl CoA reductase 1 were obtained from the genome-wide association studies (GWAS) database; data on other mitochondrial-related proteins were sourced from the IEU (Integrative Epidemiology Unit) database. Inverse-variance weighted (IVW) was used as the main approach for data analysis; weighted median, MR-Egger, and weighted mode methods were used to validate the robustness of the results. MR-Egger regression method was applied to explore the presence of horizontal pleiotropy, while the MR pleiotropy residual sum and outlier (MR-PRESSO) method was used to detect potential outliers. Leave-one-out (LOO) analyses were used to evaluate the presence of predominant instrumental variables (IVs). Cochran's Q test was used to assess heterogeneity among IVs.
The IVW approach showed that NADH dehydrogenase (ubiquinone) iron-sulfur protein 4 might be a risk factor for CKD (OR = 0.9825, 95% CI: 0.9659-0.9994, P = 0.0430). In addition, genetically predicted NADH dehydrogenase (ubiquinone) flavoprotein 2, serine tRNA ligase, NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 8, NADH dehydrogenase (ubiquinone) iron-sulfur protein 4, 2,4-Dienoyl CoA Reduction, Diablo Homolog and NAD-dependent protein deacylase sirtuin-5 showed causal association with CKD markers (all P < 0.05). The MR-Egger regression results and MR-PRESSO analysis further confirmed this data.
These exploratory findings suggest that these genes may play an important role in CKD pathogenesis and represent potential targets for future therapeutic strategies.
既往研究广泛报道了慢性肾脏病(CKD)患者线粒体相关蛋白的一些改变。在此,我们采用两样本孟德尔随机化(MR)方法来研究血清线粒体相关蛋白功能与CKD之间的潜在因果关系。
与CKD和线粒体2,4-二烯酰辅酶A还原酶1相关的数据来自全基因组关联研究(GWAS)数据库;其他线粒体相关蛋白的数据来自IEU(综合流行病学单位)数据库。采用逆方差加权(IVW)作为数据分析的主要方法;加权中位数、MR-Egger和加权模式方法用于验证结果的稳健性。应用MR-Egger回归方法探讨水平多效性的存在,同时采用MR多效性残差和异常值(MR-PRESSO)方法检测潜在异常值。采用留一法(LOO)分析评估主要工具变量(IVs)的存在情况。采用Cochran's Q检验评估IVs之间的异质性。
IVW方法显示,烟酰胺腺嘌呤二核苷酸(泛醌)铁硫蛋白4可能是CKD的一个危险因素(OR = 0.9825,95% CI:0.9659 - 0.9994,P = 0.0430)。此外,基因预测的烟酰胺腺嘌呤二核苷酸(泛醌)黄素蛋白2、丝氨酸tRNA连接酶、烟酰胺腺嘌呤二核苷酸(泛醌)1β亚复合体亚基8、烟酰胺腺嘌呤二核苷酸(泛醌)铁硫蛋白4、2,4-二烯酰辅酶A还原、暗黑同源物和烟酰胺依赖蛋白脱酰酶沉默调节蛋白5与CKD标志物存在因果关联(所有P < 0.05)。MR-Egger回归结果和MR-PRESSO分析进一步证实了这些数据。
这些探索性发现表明,这些基因可能在CKD发病机制中起重要作用,并代表未来治疗策略的潜在靶点。