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整合体外实验、网络药理学和分子对接方法以揭示毛娃儿藤的抗糖尿病潜力。

Integrating in vitro, network pharmacology, and molecular docking approaches to uncover the antidiabetic potential of Tylophora hirsuta.

作者信息

Hadi Fazal, Noor Fatima, Sardar Haseeba, Darwish Hany W, Ashfaq Usman Ali, Khan Ashraf Ali, Daglia Maria, Khan Haroon

机构信息

Department of Pharmacy, Abdul Wali Khan University Mardan, Mardan 23200, Pakistan.

Institute of Molecular Biology and Biotechnology, The University of Lahore, Lahore, Pakistan.

出版信息

Comput Biol Chem. 2025 Jun 6;119:108533. doi: 10.1016/j.compbiolchem.2025.108533.

Abstract

Tylophora hirsuta is traditionally employed in folk medicine for the treatment of various conditions including diabetes. Recently, the therapeutic potential of T. hirsuta in the management of diabetes has gained interest due to its bioactive compounds. In this study, we employed in vitro antidiabetic potential and detailed network pharmacology (NP)-based methodology for the investigation of the active ingredients of T. hirsuta. Results revealed that among all tested samples, crude extract exhibited significant effects at various concentration with IC value of 0.257 mg/ml against α-amylase, IC value of 0.104 mg/ml against α-glucosidase and aldose reductase with IC 14.533 µg/ml. Similarly, the virtual screening of the active ingredients was performed against the diabetes targets such as Glucosidase (8IBK), Amylase (1B2Y), and GLP1 (7S15) to obtain the top hits. Deoxytubulosine showed highest binding energies against the Glucosidase, and GLP1, while the Stigmasterol showed the highest binding energy against the Amylase. The virtual screening was followed by the molecular dynamic simulation studies and binding free energy calculations to validate the results of the virtual screening. The MD simulation results showed that complexes remain stable during the course of 50 ns simulation using RMSD (Root Mean Square Deviation), RMSF (Root Mean Square Fluctuation), and Rg (Radius of Gyration) post-MD analysis. The MM-PBSA/GBSA (Molecular Mechanics-Poisson-Boltzmann Surface Area/Generalized-Born Surface Area) analysis revealed favorable binding interaction and stability of the complexes in term of binding free energy. In short, the network pharmacology analysis, virtual screening, simulation, binding free energy calculations and in vitro data point to T. hirsuta as a possible option for antidiabetic medication development.

摘要

毛娃儿藤传统上用于民间医学治疗包括糖尿病在内的各种病症。最近,由于其生物活性化合物,毛娃儿藤在糖尿病管理方面的治疗潜力受到关注。在本研究中,我们采用体外抗糖尿病潜力和基于详细网络药理学(NP)的方法来研究毛娃儿藤的活性成分。结果显示,在所有测试样品中,粗提物在不同浓度下均表现出显著效果,对α-淀粉酶的IC值为0.257 mg/ml,对α-葡萄糖苷酶的IC值为0.104 mg/ml,对醛糖还原酶的IC值为14.533 μg/ml。同样,针对糖尿病靶点如葡萄糖苷酶(8IBK)、淀粉酶(1B2Y)和胰高血糖素样肽-1(GLP1,7S15)对活性成分进行虚拟筛选以获得最佳命中结果。脱氧tubulosine对葡萄糖苷酶和GLP1显示出最高结合能,而豆甾醇对淀粉酶显示出最高结合能。虚拟筛选之后进行分子动力学模拟研究和结合自由能计算以验证虚拟筛选结果。分子动力学模拟结果表明,使用均方根偏差(RMSD)、均方根波动(RMSF)和回转半径(Rg)进行MD分析后,复合物在50 ns模拟过程中保持稳定。MM-PBSA/GBSA(分子力学-泊松-玻尔兹曼表面积/广义玻恩表面积)分析显示,就结合自由能而言,复合物具有良好的结合相互作用和稳定性。简而言之,网络药理学分析、虚拟筛选、模拟、结合自由能计算和体外数据表明,毛娃儿藤可能是抗糖尿病药物开发的一个选择。

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