Kabir Farah, Sonobe Toshiaki, Zhu Qian, Vallavoju Nandini, Amako Yuka, Woo Christina M
Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, United States.
Ono Pharmaceuticals Co., Ltd., Shimamoto-cho Mishima-gun, Osaka 618-8585, Japan.
ACS Chem Biol. 2025 Jul 18;20(7):1756-1763. doi: 10.1021/acschembio.5c00272. Epub 2025 Jun 16.
Lenalidomide is a thalidomide derivative that engages the E3 ligase substrate receptor cereblon (CRBN) to promote targeted protein degradation. Lenalidomide possesses a glutarimide moiety, which is responsible for CRBN engagement, and an isoindoline moiety, which promotes neosubstrate recruitment. Modification of the glutarimide is a generalizable prodrug strategy to inhibit CRBN binding for the selective activation of CRBN-dependent activity, yet these compounds may possess CRBN-independent effects. We prepared six -alkylated glutarimide derivatives and found CRBN-independent effects on TNFα inhibition and selective effects in the cell viability profiles. Evaluation of selected compounds by global proteomics in KG1a cells reveals that the downregulation of Rab28 is CRBN-independent and mediated by autophagy. Finally, we developed a representative prodrug to demonstrate the enzymatic release of lenalidomide. Collectively, although some CRBN-independent properties are observed, modification of glutarimide is a generally viable strategy to prevent CRBN engagement in a prodrug strategy.
来那度胺是一种沙利度胺衍生物,它与E3连接酶底物受体大脑神经酰胺(CRBN)结合以促进靶向蛋白质降解。来那度胺具有一个负责与CRBN结合的戊二酰亚胺部分和一个促进新底物募集的异吲哚啉部分。戊二酰亚胺的修饰是一种可推广的前药策略,用于抑制CRBN结合以选择性激活CRBN依赖性活性,但这些化合物可能具有不依赖于CRBN的效应。我们制备了六种烷基化戊二酰亚胺衍生物,并发现它们对TNFα抑制具有不依赖于CRBN的效应以及在细胞活力谱中具有选择性效应。通过对KG1a细胞进行全局蛋白质组学分析所选化合物发现,Rab28的下调不依赖于CRBN且由自噬介导。最后,我们开发了一种代表性前药以证明来那度胺的酶促释放。总体而言,尽管观察到一些不依赖于CRBN的特性,但戊二酰亚胺的修饰是在前药策略中防止CRBN结合的一种普遍可行的策略。