DeColli Alicia A, Meyers David J, Ranjit Arina, Paule James, Serrano-Diaz Erika, Bockley Kimberly M, Ensign Laura M, Rais Rana, Freel Meyers Caren L
Department of Pharmacology and Molecular Sciences, The Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Department of Neurology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Microbiol Spectr. 2025 Jun 23:e0306924. doi: 10.1128/spectrum.03069-24.
Metabolic processes required for bacterial pathogens to adapt in the host are potential targets for the development of much-needed new antimicrobial agents. The bacterial central metabolic enzyme 1-deoxy-d-xylulose 5-phosphate synthase (DXPS) is required for the synthesis of essential isoprenoids, thiamin diphosphate (ThDP), and pyridoxal phosphate (PLP) and is believed to function in bacterial adaptations requiring these metabolites. DXPS inhibition impairs a PLP-dependent adaptation of Uropathogenic (UPEC) to d-serine, a bacteriostatic host metabolite in urine that inhibits pantothenate production in Coenzyme A (CoA) biosynthesis. CoA is required for a functioning tricarboxylic acid (TCA cycle, which is critical for UPEC survival in the urinary tract. Accordingly, inhibition of DXPS also sensitizes UPEC to -pentylpantothenamide (N5-Pan, ), an inhibitor of CoA synthesis. However, is enzymatically hydrolyzed by pantetheinases, presenting challenges for its use in studies. We sought to identify a pantothenamide inhibitor candidate for studies to explore the efficacy of inhibitor combinations targeting DXPS and CoA syntheses. Here, we describe studies that highlight a truncated analog of , pantetheinase-resistant N5-α-Pan (), as a promising candidate for studies. Analog exhibited comparable antimicrobial activity with against UPEC grown in nutrient-limited culture conditions, including urine, and displayed enhanced activity in the presence of a DXPS inhibitor. In contrast to , analog was stable in the presence of mouse plasma and liver enzymes, making it suitable for studies to investigate an inhibitor combination targeting DXPS and CoA synthesis in UPEC by the ascending UTI assay.IMPORTANCENew approaches are needed to control the emergence of drug resistance in bacterial pathogens that cause life-threatening infections. Targeting DXPS-dependent synthesis of vitamins is a promising approach to prevent pathogen metabolic adaptation. Metabolic processes requiring DXPS-dependent synthesis of pyridoxal phosphate (PLP) or thiamin diphosphate (ThDP) can become particularly vulnerable in a specific pathogen and/or host environment, under conditions of DXPS inhibition. We previously observed that UPEC grown in urine is particularly sensitive to an inhibitor combination targeting DXPS and CoA synthesis; however, the CoA inhibitor is readily hydrolyzed by a host pantetheinase. This study is significant, as it identifies a pantothenamide inhibitor of CoA synthesis, N5-α-Pan (), that is stable to mouse plasma and liver enzymes and whose activity is enhanced in the presence of a DXPS inhibitor. Thus, is suitable for studies to explore how a pathogen can become sensitized under conditions of DXPS inhibition.
细菌病原体在宿主体内适应所必需的代谢过程是开发急需的新型抗菌药物的潜在靶点。细菌中心代谢酶1-脱氧-D-木酮糖-5-磷酸合酶(DXPS)是合成必需类异戊二烯、硫胺素二磷酸(ThDP)和磷酸吡哆醛(PLP)所必需的,并且被认为在需要这些代谢物的细菌适应过程中发挥作用。DXPS抑制会损害尿路致病性大肠杆菌(UPEC)对D-丝氨酸的PLP依赖性适应,D-丝氨酸是尿液中的一种抑菌宿主代谢物,可抑制辅酶A(CoA)生物合成中泛酸的产生。CoA是三羧酸(TCA)循环正常运作所必需的,而TCA循环对UPEC在泌尿道中的存活至关重要。因此,DXPS的抑制也会使UPEC对CoA合成抑制剂N5-戊基泛酰胺(N5-Pan)敏感。然而,N5-Pan会被泛硫解酶酶解,这给其在研究中的应用带来了挑战。我们试图鉴定一种泛酰胺抑制剂候选物,用于研究靶向DXPS和CoA合成的抑制剂组合的疗效。在此,我们描述了一些研究,这些研究突出了一种截短的N5-Pan类似物,即抗泛硫解酶的N5-α-Pan,作为研究的一个有前景的候选物。类似物N5-α-Pan在营养受限的培养条件下(包括尿液中)对生长的UPEC表现出与N5-Pan相当的抗菌活性,并且在存在DXPS抑制剂的情况下活性增强。与N5-Pan不同,类似物N5-α-Pan在小鼠血浆和肝脏酶存在的情况下是稳定的,这使其适用于通过上行性尿路感染试验研究靶向UPEC中DXPS和CoA合成的抑制剂组合。
重要性
需要新的方法来控制导致危及生命感染的细菌病原体中耐药性的出现。靶向依赖DXPS的维生素合成是预防病原体代谢适应的一种有前景的方法。在DXPS抑制的条件下,需要依赖DXPS合成磷酸吡哆醛(PLP)或硫胺素二磷酸(ThDP)的代谢过程在特定病原体和/或宿主环境中可能会变得特别脆弱。我们之前观察到,在尿液中生长的UPEC对靶向DXPS和CoA合成的抑制剂组合特别敏感;然而,CoA抑制剂很容易被宿主泛硫解酶水解。这项研究具有重要意义,因为它鉴定出一种CoA合成的泛酰胺抑制剂N5-α-Pan,它对小鼠血浆和肝脏酶稳定,并且在存在DXPS抑制剂的情况下活性增强。因此,N5-α-Pan适用于研究在DXPS抑制条件下病原体如何变得敏感。