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单细胞RNA测序描绘中华鳖睾丸细胞图谱及细胞间相互作用

Single-Cell RNA Sequencing Delineates the Atlas and Cell Interactions of the Testicular Cells in Chinese Soft-Shelled Turtle (Pelodiscus sinensis).

作者信息

Yao Jingting, Li Sendong, Ban Wenzhuo, Zeng Linhui, Cui Han, Chen Kaili, Xu Hongyan

机构信息

Integrative Science Center of Germplasm Creation in Western China Integrative Science Center of Germplasm Creation in Western China (CHONGQING) Science City & College of Fisheries, Southwest University, Key Laboratory of Freshwater Fish Reproduction and Development, Ministry of Education, Key Laboratory of Aquatic Sciences of Chongqing, Chongqing, 402460, China.

出版信息

Mar Biotechnol (NY). 2025 Jun 23;27(4):101. doi: 10.1007/s10126-025-10474-5.

DOI:10.1007/s10126-025-10474-5
PMID:40549204
Abstract

Spermatogenesis is a complicated process of sexual reproduction, involving cell proliferation and differentiation, and depends on intricate interactions between testicular somatic cells and germ cells. For further investigations on male germ cells' development and differentiation in Chinese soft-shelled turtle (Pelodiscus sinensis), it is crucial to define testicular cell types and their molecular regulators. Here, the 10 × Genomics single-cell RNA sequencing was adopted to study the transcriptomic profiles of single cells during the spermatogenesis of adult Chinese soft-shelled turtle. In total, 7317 individual cell transcriptomes were collected for analysis, and 11 cell types were identified with known differentially expressed genes, including Leydig cells, Sertoli cells, spermatogonia, spermatocytes, and spermatids. Likewise, the top 10 marker genes and top-enriched gene pathways were analyzed in each cell type. Intriguingly, ligand-receptor analysis showed that the strongest interaction between Leydig cells and germ cells was using CellChat. Moreover, a primary developmental trajectory of male germ cells was constructed from spermatogonia to spermatids, as well as some important cell-specific regulators were identified for labeling the germ cells at different stages, including PCNA and Stra8, validated by immunostaining fluorescence. In addition, the transcriptomic profiles of male germ cells at different stages were comparatively analyzed among fruit fly, fish, mammals, and Chinese soft-shelled turtle, and the conserved and divergent regulators of male germ cells were summarized across species. In conclusion, this study provided novel insights into the testicular cells' atlas in turtles, and the findings would facilitate the development of techniques for manipulating germ cells, such as isolating cells and defining stages of differentiation.

摘要

精子发生是一个复杂的有性生殖过程,涉及细胞增殖和分化,并且依赖于睾丸体细胞与生殖细胞之间复杂的相互作用。为了进一步研究中华鳖雄性生殖细胞的发育和分化,定义睾丸细胞类型及其分子调节因子至关重要。在此,采用10×基因组学单细胞RNA测序技术研究成年中华鳖精子发生过程中单个细胞的转录组图谱。总共收集了7317个单细胞转录组进行分析,通过已知的差异表达基因鉴定出11种细胞类型,包括睾丸间质细胞、支持细胞、精原细胞、精母细胞和精子细胞。同样,对每种细胞类型中的前10个标记基因和富集程度最高的基因通路进行了分析。有趣的是,配体-受体分析表明,使用CellChat软件发现睾丸间质细胞与生殖细胞之间的相互作用最强。此外,构建了从精原细胞到精子细胞的雄性生殖细胞的主要发育轨迹,并且鉴定出一些重要的细胞特异性调节因子用于标记不同阶段的生殖细胞,包括增殖细胞核抗原(PCNA)和视黄酸诱导基因8(Stra8),通过免疫荧光染色进行了验证。此外,对果蝇、鱼类、哺乳动物和中华鳖不同阶段雄性生殖细胞的转录组图谱进行了比较分析,总结了跨物种的雄性生殖细胞保守和不同的调节因子。总之,本研究为龟类睾丸细胞图谱提供了新的见解,这些发现将有助于开发操纵生殖细胞的技术,如分离细胞和定义分化阶段。

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本文引用的文献

1
Single-cell RNA sequencing technology in human spermatogenesis: Progresses and perspectives.单细胞 RNA 测序技术在人类精子发生中的应用:进展与展望。
Mol Cell Biochem. 2024 Aug;479(8):2017-2033. doi: 10.1007/s11010-023-04840-x. Epub 2023 Sep 2.
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Application of single-cell RNA sequencing on human testicular samples: a comprehensive review.单细胞 RNA 测序在人类睾丸样本中的应用:全面综述。
Int J Biol Sci. 2023 Apr 9;19(7):2167-2197. doi: 10.7150/ijbs.82191. eCollection 2023.
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Decoding the Spermatogenesis Program: New Insights from Transcriptomic Analyses.
解码精子发生程序:转录组分析的新见解。
Annu Rev Genet. 2022 Nov 30;56:339-368. doi: 10.1146/annurev-genet-080320-040045. Epub 2022 Sep 7.
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Dissecting Human Gonadal Cell Lineage Specification and Sex Determination Using A Single-cell RNA-seq Approach.利用单细胞 RNA 测序方法解析人类性腺细胞谱系特化和性别决定。
Genomics Proteomics Bioinformatics. 2022 Apr;20(2):223-245. doi: 10.1016/j.gpb.2022.04.002. Epub 2022 May 2.
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The ssDNA-binding protein MEIOB acts as a dosage-sensitive regulator of meiotic recombination.ssDNA 结合蛋白 MEIOB 作为减数分裂重组的剂量敏感调控因子。
Nucleic Acids Res. 2020 Dec 2;48(21):12219-12233. doi: 10.1093/nar/gkaa1016.
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Corrigendum: Developmental regulation of cell type-specific transcription by novel promoter-proximal sequence elements.勘误:新型启动子近端序列元件对细胞类型特异性转录的发育调控
Genes Dev. 2020 Jun 1;34(11-12):861. doi: 10.1101/gad.339655.120.
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In situ hybridization: Introduction to techniques, applications and pitfalls in the performance and interpretation of assays.原位杂交:技术介绍、在检测技术的执行和解释中的应用及陷阱。
Semin Diagn Pathol. 2019 Sep;36(5):336-341. doi: 10.1053/j.semdp.2019.06.004. Epub 2019 Jun 12.
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What has single-cell RNA-seq taught us about mammalian spermatogenesis?单细胞 RNA 测序让我们对哺乳动物精子发生有了哪些了解?
Biol Reprod. 2019 Sep 1;101(3):617-634. doi: 10.1093/biolre/ioz088.
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Dissecting Cellular Heterogeneity Using Single-Cell RNA Sequencing.利用单细胞RNA测序剖析细胞异质性
Mol Cells. 2019 Mar 31;42(3):189-199. doi: 10.14348/molcells.2019.2446. Epub 2019 Feb 12.
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The adult human testis transcriptional cell atlas.成人睾丸转录组细胞图谱。
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