Toropova Alla P, Toropov Andrey A, Benfenati Emilio
Istituto di Ricerche Farmacologiche Mario Negri IRCCS, Department of Environmental Health Science, Via Mario Negri 2, 20156 Milan, Italy.
J Xenobiot. 2025 Jun 1;15(3):82. doi: 10.3390/jox15030082.
: The toxicity of pesticides for fish in general and Rainbow Trout () in particular is an important ecological indicator required by regulations, and it implies the use of a large number of fish. The number of animals needed would be even higher to evaluate metabolites and pesticide impurities. Considering ethical issues, the costs, and the necessary resources, the use of in silico models is often proposed. : We explore the use of advanced Monte Carlo methods to obtain improved results for models testing Rainbow Trout () acute toxicity. Several versions of the stochastic Monte Carlo simulation of pesticide toxicity for Rainbow Trout, carried out using CORAL software, were studied. The set of substances was split into four subsets: active training, passive training, calibration, and validation. Modeling was repeated five times to enable better statistical evaluation. To improve the predictive potential of models, the index of ideality of correlation (IIC), correlation intensity index (CII), and coefficient of conformism of correlation prediction (CCCP) were applied. : The most suitable results were observed in the case of the CCCP-based optimization for SMILES-based descriptors, achieving an R of 0.88 on the validation set, in all five random splits, demonstrating consistent and robust modeling performance. The relationship of information systems related to QSAR simulation and new ideas is discussed, assigning a key role to fundamental concepts like mass and energy. The study of the mentioned criteria of predictive potential during the conducted computer experiments showed that even though they are all aimed at improving the predictive potential, their values do not correlate, except for the CII and the CCCP. This means that, in general, the information impact of the considered criteria has a different nature, at least in the case of the simulation of toxicity for Rainbow Trout (). The applicability domain of the model is specific for pesticides; the software identifies potential outliers by looking at rare molecular fragments.
农药对鱼类尤其是虹鳟鱼的毒性是法规要求的一项重要生态指标,这意味着要使用大量鱼类。若要评估代谢物和农药杂质,所需动物数量会更多。考虑到伦理问题、成本和所需资源,人们常提议使用计算机模拟模型。我们探索使用先进的蒙特卡罗方法来改进虹鳟鱼急性毒性模型测试的结果。研究了使用CORAL软件对虹鳟鱼农药毒性进行的几个版本的随机蒙特卡罗模拟。将物质集分为四个子集:主动训练集、被动训练集、校准集和验证集。建模重复五次以进行更好的统计评估。为提高模型的预测潜力,应用了相关理想指数(IIC)、相关强度指数(CII)和相关预测一致性系数(CCCP)。在基于CCCP对基于SMILES的描述符进行优化的情况下观察到最合适的结果,在所有五次随机划分中,验证集上的R值为0.88,表明建模性能一致且稳健。讨论了与QSAR模拟相关的信息系统关系和新观点,赋予质量和能量等基本概念关键作用。在进行的计算机实验中对上述预测潜力标准的研究表明,尽管它们都旨在提高预测潜力,但除了CII和CCCP外,它们的值并不相关。这意味着,一般来说,所考虑标准的信息影响具有不同性质,至少在虹鳟鱼毒性模拟的情况下是这样。该模型的适用范围特定于农药;该软件通过查看罕见的分子片段来识别潜在的异常值。