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通过实验和计算化学方法利用噻唑化学实现抗真菌策略:抗生物膜、分子对接、动力学及密度泛函理论分析

Harnessing thiazole chemistry for antifungal strategies through an experimental and computational chemistry approach: anti-biofilm, molecular docking, dynamics, and DFT analysis.

作者信息

Shinde Rahul A, Adole Vishnu A, Patil Rajendra H, Khairnar Bhushan B, Jagdale Bapu S, Almutairi Tahani Mazyad, Patel Harun, Islam Mohammad Shahidul, Ahmad Iqrar, Kumar A Ram, Selvaraj S, Pawar Thansing B, Alam Mahboob

机构信息

Department of Chemistry, Mahatma Gandhi Vidyamandir's Maharaja Sayajirao Gaikwad Arts, Science and Commerce College Malegaon Nashik 423105 India

Department of Chemistry, Mahatma Gandhi Vidyamandir's Loknete Vyankatrao Hiray Arts, Science and Commerce College Panchavati Nashik 422003 India

出版信息

RSC Adv. 2025 Jun 26;15(27):21838-21858. doi: 10.1039/d5ra00657k. eCollection 2025 Jun 23.

Abstract

This study reports the design, synthesis, and evaluation of four novel ()-2-(2-(1-(5-chlorothiophen-2-yl)ethylidene)hydrazineyl)-4-(aryl)thiazole derivatives (4a-4d) as potential anti-biofilm agents against . The compounds were structurally characterized by FT-IR, H NMR, C NMR, and HRMS spectral techniques. Biofilm inhibition assays revealed that derivatives 4a-4c suppressed over 50% of biofilm formation at a concentration of 12.5 μg mL, although exopolysaccharide production remained largely unaffected. Molecular docking indicated strong binding affinities toward lanosterol 14α-demethylase, with 4a achieving the highest docking score (-8.715 kcal mol) through hydrogen bonding and π-π stacking interactions. Stability of the 4c-protein complex was confirmed by molecular dynamics simulations, supported by RMSD and flexibility analyses. An in-depth computational analysis was also performed on the most active thiazole derivative, compound 4c. DFT and NBO analyses of 4c indicated favourable geometry and key electron delocalization, while ELF, LOL, NCI, and RDG studies highlighted the role of non-covalent interactions in stabilizing the molecular framework. Additionally, the ADME profile of 4c demonstrated favourable pharmacokinetic properties, including high gastrointestinal absorption and a moderate lipophilicity index, highlighting its potential as a lead antifungal scaffold.

摘要

本研究报告了四种新型()-2-(2-(1-(5-氯噻吩-2-基)亚乙基)肼基)-4-(芳基)噻唑衍生物(4a - 4d)作为潜在抗生物膜剂针对的设计、合成及评估。通过傅里叶变换红外光谱(FT - IR)、氢核磁共振(H NMR)、碳核磁共振(C NMR)和高分辨质谱(HRMS)光谱技术对这些化合物进行了结构表征。生物膜抑制试验表明,在浓度为12.5 μg/mL时,衍生物4a - 4c抑制了超过50%的生物膜形成,尽管胞外多糖的产生基本未受影响。分子对接表明对羊毛甾醇14α - 脱甲基酶具有强结合亲和力,4a通过氢键和π - π堆积相互作用获得了最高对接分数(-8.715 kcal/mol)。通过分子动力学模拟以及均方根偏差(RMSD)和柔性分析,证实了4c - 蛋白质复合物的稳定性。还对活性最高的噻唑衍生物化合物4c进行了深入的计算分析。4c的密度泛函理论(DFT)和自然键轨道(NBO)分析表明其几何结构良好且存在关键的电子离域,而电子定位函数(ELF)、分子中的定域轨道定位化分布(LOL)、非共价相互作用(NCI)和重新定位密度梯度(RDG)研究突出了非共价相互作用在稳定分子框架中的作用。此外,4c的药物代谢动力学特征显示出良好的药代动力学性质,包括高胃肠道吸收和适度的脂溶性指数,突出了其作为潜在抗真菌骨架的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2465/12199137/3289eb6a725e/d5ra00657k-f1.jpg

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