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凝血因子XII N端结构域1-5的晶体结构

Crystal structure of coagulation factor XII N-terminal domains 1-5.

作者信息

Saleem Muhammad, Li Chan, Kaira Bubacarr G, Brown Alexander K, Pathak Monika, Najmudin Shabir, Cowieson Nathan, Dreveny Ingrid, Wilson Clare, Shamanaev Aleksandr, Gailani David, Smith Stephanie A, Morrissey James H, Philippou Helen, Emsley Jonas

机构信息

Biodiscovery Institute, School of Pharmacy, University of Nottingham, Nottingham, United Kingdom.

Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom.

出版信息

Acta Crystallogr D Struct Biol. 2025 Jul 1;81(Pt 7):380-393. doi: 10.1107/S2059798325005297. Epub 2025 Jun 27.

Abstract

Factor XIIa (FXIIa) is generated from its zymogen factor XII (FXII) by contact with polyanions such as inorganic polyphosphates. FXIIa cleaves the substrates prekallikrein and factor XI, triggering inflammatory cascades and plasma coagulation. From the N-terminus, FXII has fibronectin type II (FnII), epidermal growth factor-1 (EGF1), fibronectin type I (FnI), EGF2 and kringle domains. The N-terminal domains of FXII mediate polyanion and Zn binding. To understand how ligand binding to polyanions and Zn is coordinated across multiple domains, we determined the crystal structure of recombinant FXII domains 1-5 (FXII) to 3.4 Å resolution. A separate crystal structure of the isolated FXII FnII domain at 1.2 Å resolution revealed two bound Zn ions. In FXII a head-to-tail interaction is formed between the FnII and kringle domains, co-localizing the lysine-binding sites of the kringle domain and the cation-binding site of the FnII domain. Two FXII monomers interlock, burying a large surface area of 2067 Å, such that two kringle domains point outwards separated by a distance of 20 Å. The polyanion-binding site in the EGF1 domain is localized onto a plane together with the FnII and FnI domains. Using native mass spectrometry, we detected a major FXII monomer peak and a minor dimer peak. Small-angle X-ray scattering and gel-filtration chromatography revealed the presence of monomers and dimers in solution. These FXII N-terminal domain structures provide a holistic framework to understand how the mosaic domain structure of FXII assembles diverse ligand-binding sites in three dimensions.

摘要

凝血因子 XIIa(FXIIa)由其酶原凝血因子 XII(FXII)与无机多磷酸盐等多阴离子接触后产生。FXIIa 可切割底物前激肽释放酶和凝血因子 XI,引发炎症级联反应和血浆凝固。从 N 端开始,FXII 具有 II 型纤连蛋白(FnII)、表皮生长因子 -1(EGF1)、I 型纤连蛋白(FnI)、EGF2 和 kringle 结构域。FXII 的 N 端结构域介导多阴离子和锌的结合。为了解配体与多阴离子和锌的结合如何在多个结构域之间协同,我们确定了重组 FXII 结构域 1 - 5(FXII)的晶体结构,分辨率为 3.4 Å。分离的 FXII FnII 结构域在 1.2 Å 分辨率下的单独晶体结构显示有两个结合的锌离子。在 FXII 中,FnII 和 kringle 结构域之间形成头对头相互作用,使 kringle 结构域的赖氨酸结合位点和 FnII 结构域的阳离子结合位点共定位。两个 FXII 单体相互锁定,掩埋了 2067 Å 的大面积,使得两个 kringle 结构域向外指向,相隔 20 Å 的距离。EGF1 结构域中的多阴离子结合位点与 FnII 和 FnI 结构域一起定位在一个平面上。使用天然质谱,我们检测到一个主要的 FXII 单体峰和一个次要的二聚体峰。小角 X 射线散射和凝胶过滤色谱显示溶液中存在单体和二聚体。这些 FXII N 端结构域结构提供了一个整体框架,以了解 FXII 的镶嵌结构域结构如何在三维空间中组装不同的配体结合位点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/72f1/12216678/e11605f2ea3f/d-81-00380-fig1.jpg

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