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人类RNA结合蛋白SMAUG1的凝聚物形成受其内在无序区域以及与14-3-3蛋白相互作用的控制。

Condensate formation of the human RNA-binding protein SMAUG1 is controlled by its intrinsically disordered regions and interactions with 14-3-3 proteins.

作者信息

Carey Olivia, Fehilly John, O'Leary Eoghan Thomas, O'Shea Stephen, Juda Klaudia, Fitzel Rahel, Selvaraj Pooja, Burk Katja, Lindsay Andrew J, Young Paul, Pancsa Rita, Mészáros Bálint, Dean Kellie

机构信息

School of Biochemistry and Cell Biology, University College Cork, Cork T12 XF62, Ireland.

Institute of Molecular Life Sciences, HUN-REN Research Centre for Natural Sciences, Budapest 1117, Hungary.

出版信息

J Mol Biol. 2025 Jun 28:169314. doi: 10.1016/j.jmb.2025.169314.

Abstract

SMAUG1 is a human RNA-binding protein (RBP) that is dysregulated in a wide range of diseases. It is evolutionarily conserved and forms condensates containing translationally repressed RNAs. This indicates that condensation is central to SMAUG1 function. In this work, we show that a prion-like disordered region within the C-terminal half of SMAUG1 is required, but not sufficient, to drive formation of liquid-like condensates in cells. We use biochemical assays to show that SMAUG1 liquid-liquid phase separation (LLPS) appears to be independent of RNA binding and does not depend on other large, disordered regions of the protein that potentially harbor several binding sites for partner proteins. Using a combination of computational predictions, structural modeling, in vitro and in cell measurements, we show that SMAUG1-driven condensation is negatively regulated by direct interactions with members of the 14-3-3 protein family. These interactions are mediated by at least four distinct phospho-regulated short linear motifs within the disordered regions of SMAUG1, working synergistically. Interactions between SMAUG1 and dimeric 14-3-3 proteins drive the dissolution of condensates and are likely intertwined with other unknown regulatory mechanisms. Interestingly, a monomeric 14-3-3 variant cannot induce condensate dissolution, suggesting that the conformational constraints imposed on the SMAUG1 polypeptide chain by dimeric 14-3-3 proteins, potentially bridging distant binding sites, are important for the described phase separation-regulatory mechanism. Our results reinforce recent findings on the general regulatory role of 14-3-3 proteins in biological condensation and provide valuable novel insights into how SMAUG1 phase separation is regulated.

摘要

SMAUG1是一种人类RNA结合蛋白(RBP),在多种疾病中表达失调。它在进化上保守,并形成含有翻译受抑制RNA的凝聚物。这表明凝聚对于SMAUG1的功能至关重要。在这项研究中,我们发现SMAUG1 C端后半部分的一个类似朊病毒的无序区域是驱动细胞内形成类液体凝聚物所必需的,但并不充分。我们通过生化分析表明,SMAUG1的液-液相分离(LLPS)似乎与RNA结合无关,也不依赖于该蛋白其他可能含有多个与伴侣蛋白结合位点的大的无序区域。通过结合计算预测、结构建模、体外和细胞内测量,我们表明SMAUG1驱动的凝聚受到与14-3-3蛋白家族成员直接相互作用的负调控。这些相互作用由SMAUG1无序区域内至少四个不同的磷酸化调节短线性基序协同介导。SMAUG1与二聚体14-3-3蛋白之间的相互作用驱动凝聚物的溶解,并且可能与其他未知的调节机制相互交织。有趣的是,单体14-3-3变体不能诱导凝聚物溶解,这表明二聚体14-3-3蛋白对SMAUG1多肽链施加的构象限制(可能连接远处的结合位点)对于所述的相分离调节机制很重要。我们的结果强化了关于14-3-3蛋白在生物凝聚中的一般调节作用的最新发现,并为SMAUG1相分离的调节提供了有价值的新见解。

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