• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

单细胞RNA测序联合染色质转座酶可及性测序分析以探究四氯化碳诱导的肝脏炎性损伤的代谢平衡机制。

ScRNA-seq combined with ATAC-seq analysis to explore the metabolic balance mechanism of CCl4-induced liver inflammatory injury.

作者信息

Liu Hui, Zhang Yisha, Ning Shoubin

机构信息

Department of Gastroenterology, Air Force Medical Center, Air Force Medical University, Beijing, China.

Department of Internal Medicine, First Rongjun Youfu Hospital of Shandong, Jinan, China.

出版信息

Front Immunol. 2025 Jun 16;16:1600685. doi: 10.3389/fimmu.2025.1600685. eCollection 2025.

DOI:10.3389/fimmu.2025.1600685
PMID:40589742
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12206626/
Abstract

BACKGROUND

Drug-induced liver injury (DILI) can provoke inflammation and fibrosis in the liver, potentially leading to severe liver diseases and mortality; however, effective treatments for liver fibrosis remain elusive. The objective of this study was to explore the cellular metabolic mechanism after carbon tetrachloride (CCl4)-induced liver injury.

METHODS

Initially, we conducted a comprehensive analysis of ATAC-seq, RNA-seq, and scRNA-seq datasets derived from CCl4-induced chronic liver injury in mice. Subsequently, functional enrichment analysis and transcription factor analysis were performed. Finally, the expression changes of key substances and transcription factors were verified by cell and animal experiments.

RESULTS

Our investigation uncovered that hepatocyte histone acetylation intensified with prolonged injury durations. Subsequent functional enrichment analysis identified that fatty acid metabolism as the predominant pathway implicated in hepatocyte damage. The tricarboxylic acid cycle in hepatocytes exhibited partial slowdown and the mitochondrial electron transport chain (ETC) was inhibited in the early stage of CCl4-induced chronic injury. However, in the later stage of injury, there was a gradual restoration of the ETC functionality, coupled with an enhanced capacity for synthesis of fatty acids. This process of metabolic equilibrium restoration may be related to acute lipid accumulation during liver injury repair. Transcription factor analysis found that Zhx2, a crucial suppressor of ETC, experienced sustained increases in chromatin accessibility within injured hepatocytes, but its expression level increased first and then decreased. The key transcriptional repressor Zbtb20 could inhibit the expression of Zhx2, and its expression trend corresponded to that of Zhx2. Cellular experiments demonstrated that CCl4 induced upregulation of acetyl-CoA, Zhx2 and Zbtb20 in a time-dependent manner. The levels of acetyl-CoA and Zbtb20 increased with the duration of injury in animal experiments, but Zhx2 showed a rise in expression only at week 3, while expression returned to normal levels after week 6.

CONCLUSION

Our findings contribute to the understanding of the evolution and underlying CCl4-induced inflammatory mechanisms governing hepatocyte inflammatory injury and the subsequent metabolic shift from imbalance toward balance under chronic CCl4 exposure, offering novel perspectives and directions for targeted therapeutic interventions in DILI.

摘要

背景

药物性肝损伤(DILI)可引发肝脏炎症和纤维化,可能导致严重肝脏疾病甚至死亡;然而,肝纤维化的有效治疗方法仍然难以捉摸。本研究的目的是探索四氯化碳(CCl4)诱导肝损伤后的细胞代谢机制。

方法

首先,我们对来自CCl4诱导的小鼠慢性肝损伤的ATAC-seq、RNA-seq和scRNA-seq数据集进行了全面分析。随后,进行了功能富集分析和转录因子分析。最后,通过细胞和动物实验验证了关键物质和转录因子的表达变化。

结果

我们的研究发现,随着损伤持续时间延长,肝细胞组蛋白乙酰化增强。随后的功能富集分析确定脂肪酸代谢是肝细胞损伤的主要相关途径。在CCl4诱导的慢性损伤早期,肝细胞中的三羧酸循环表现出部分减慢,线粒体电子传递链(ETC)受到抑制。然而,在损伤后期,ETC功能逐渐恢复,同时脂肪酸合成能力增强。这种代谢平衡恢复过程可能与肝损伤修复期间的急性脂质积累有关。转录因子分析发现,ETC的关键抑制因子Zhx2在受损肝细胞中的染色质可及性持续增加,但其表达水平先升高后降低。关键转录抑制因子Zbtb20可抑制Zhx2的表达,其表达趋势与Zhx2一致。细胞实验表明,CCl4以时间依赖性方式诱导乙酰辅酶A、Zhx2和Zbtb20上调。在动物实验中,乙酰辅酶A和Zbtb20的水平随损伤持续时间增加,但Zhx2仅在第3周时表达升高,而在第6周后表达恢复至正常水平。

结论

我们的研究结果有助于理解CCl4诱导的肝细胞炎症损伤的演变及潜在炎症机制,以及在慢性CCl4暴露下随后从失衡向平衡的代谢转变,为DILI的靶向治疗干预提供了新的视角和方向。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b36/12206626/6279e854a2c5/fimmu-16-1600685-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b36/12206626/b8be660b6692/fimmu-16-1600685-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b36/12206626/86db649cd258/fimmu-16-1600685-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b36/12206626/038bdb5886bf/fimmu-16-1600685-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b36/12206626/5ffce6cc563b/fimmu-16-1600685-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b36/12206626/1c490c003d9c/fimmu-16-1600685-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b36/12206626/1f0376f3e14f/fimmu-16-1600685-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b36/12206626/6279e854a2c5/fimmu-16-1600685-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b36/12206626/b8be660b6692/fimmu-16-1600685-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b36/12206626/86db649cd258/fimmu-16-1600685-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b36/12206626/038bdb5886bf/fimmu-16-1600685-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b36/12206626/5ffce6cc563b/fimmu-16-1600685-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b36/12206626/1c490c003d9c/fimmu-16-1600685-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b36/12206626/1f0376f3e14f/fimmu-16-1600685-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b36/12206626/6279e854a2c5/fimmu-16-1600685-g007.jpg

相似文献

1
ScRNA-seq combined with ATAC-seq analysis to explore the metabolic balance mechanism of CCl4-induced liver inflammatory injury.单细胞RNA测序联合染色质转座酶可及性测序分析以探究四氯化碳诱导的肝脏炎性损伤的代谢平衡机制。
Front Immunol. 2025 Jun 16;16:1600685. doi: 10.3389/fimmu.2025.1600685. eCollection 2025.
2
An Nrf2-NF-κB Crosstalk Controls Hepatocyte Proliferation in the Normal and Injured Liver.Nrf2与NF-κB的相互作用调控正常及损伤肝脏中的肝细胞增殖。
Cell Mol Gastroenterol Hepatol. 2025;19(7):101480. doi: 10.1016/j.jcmgh.2025.101480. Epub 2025 Feb 17.
3
Isolated Methylmalonic Acidemia孤立性甲基丙二酸血症
4
FNDC5/Irisin exacerbates APAP-induced acute liver injury through activating JNK/NF-κB and inflammatory response.FNDC5/鸢尾素通过激活JNK/NF-κB和炎症反应加重对乙酰氨基酚诱导的急性肝损伤。
Acta Pharmacol Sin. 2025 Feb 27. doi: 10.1038/s41401-025-01509-7.
5
Systemic pharmacological treatments for chronic plaque psoriasis: a network meta-analysis.系统性药理学治疗慢性斑块状银屑病:网络荟萃分析。
Cochrane Database Syst Rev. 2021 Apr 19;4(4):CD011535. doi: 10.1002/14651858.CD011535.pub4.
6
Systemic pharmacological treatments for chronic plaque psoriasis: a network meta-analysis.慢性斑块状银屑病的全身药理学治疗:一项网状Meta分析。
Cochrane Database Syst Rev. 2020 Jan 9;1(1):CD011535. doi: 10.1002/14651858.CD011535.pub3.
7
GRINA alleviates hepatic ischemia‒reperfusion injury-induced apoptosis and ER-phagy by enhancing HRD1-mediated ATF6 ubiquitination.GRINA通过增强HRD1介导的ATF6泛素化来减轻肝缺血再灌注损伤诱导的细胞凋亡和内质网自噬。
J Hepatol. 2025 Jan 22. doi: 10.1016/j.jhep.2025.01.012.
8
Management of urinary stones by experts in stone disease (ESD 2025).结石病专家对尿路结石的管理(2025年结石病专家共识)
Arch Ital Urol Androl. 2025 Jun 30;97(2):14085. doi: 10.4081/aiua.2025.14085.
9
Exome and transcriptome analysis link calcium channel pathway aberrations to botulinum toxin A resistance in Hailey-Hailey disease.外显子组和转录组分析将钙通道途径异常与黑利-黑利病中肉毒杆菌毒素A耐药性联系起来。
Br J Dermatol. 2025 Jun 20;193(1):147-156. doi: 10.1093/bjd/ljaf112.
10
Systemic pharmacological treatments for chronic plaque psoriasis: a network meta-analysis.慢性斑块状银屑病的全身药理学治疗:一项网状荟萃分析。
Cochrane Database Syst Rev. 2017 Dec 22;12(12):CD011535. doi: 10.1002/14651858.CD011535.pub2.

本文引用的文献

1
Elucidation of the mechanism Underlying the promotion of ferroptosis and enhanced antitumor immunity by citrus polymethoxyflavones in CRC cells.阐明柑橘多甲氧基黄酮在结直肠癌细胞中促进铁死亡和增强抗肿瘤免疫的潜在机制。
Front Pharmacol. 2025 Apr 11;16:1571178. doi: 10.3389/fphar.2025.1571178. eCollection 2025.
2
Exploring NUP62's role in cancer progression, tumor immunity, and treatment response: insights from multi-omics analysis.探索NUP62在癌症进展、肿瘤免疫和治疗反应中的作用:来自多组学分析的见解
Front Immunol. 2025 Mar 3;16:1559396. doi: 10.3389/fimmu.2025.1559396. eCollection 2025.
3
Integrative Disulfidptosis-Based Risk Assessment for Prognostic Stratification and Immune Profiling in Glioma.
基于整合性二硫化物诱导细胞焦亡的胶质瘤预后分层及免疫特征风险评估
J Cell Mol Med. 2025 Feb;29(4):e70429. doi: 10.1111/jcmm.70429.
4
Hepatoprotective effect of the Sechium HD-Victor hybrid extract in a model of liver damage induced by carbon tetrachloride in mice.佛手瓜HD-Victor杂交提取物对四氯化碳诱导的小鼠肝损伤模型的肝保护作用。
Biomed Pharmacother. 2025 Feb;183:117831. doi: 10.1016/j.biopha.2025.117831. Epub 2025 Jan 22.
5
Xiaobugan decoction prevents CCl-induced acute liver injury by modulating gut microbiota and hepatic metabolism.消癥护肝汤通过调节肠道菌群和肝脏代谢预防 CCl 诱导的急性肝损伤。
Phytomedicine. 2024 Dec;135:156113. doi: 10.1016/j.phymed.2024.156113. Epub 2024 Oct 1.
6
Chemically induced revitalization of damaged hepatocytes for regenerative liver repair.化学诱导受损肝细胞的复苏以进行再生性肝修复。
iScience. 2023 Nov 23;26(12):108532. doi: 10.1016/j.isci.2023.108532. eCollection 2023 Dec 15.
7
ZHX2 emerges as a negative regulator of mitochondrial oxidative phosphorylation during acute liver injury.ZHX2 在急性肝损伤中作为线粒体氧化磷酸化的负调控因子出现。
Nat Commun. 2023 Nov 18;14(1):7527. doi: 10.1038/s41467-023-43439-0.
8
SREBF1/SREBP-1 concurrently regulates lipid synthesis and lipophagy to maintain lipid homeostasis and tumor growth.SREBF1/SREBP-1 同时调节脂质合成和脂自噬以维持脂质平衡和肿瘤生长。
Autophagy. 2024 May;20(5):1183-1185. doi: 10.1080/15548627.2023.2275501. Epub 2023 Nov 5.
9
Tolerance of repeated toxic injuries of murine livers is associated with steatosis and inflammation.反复的毒性肝损伤耐受与脂肪肝和炎症相关。
Cell Death Dis. 2023 Jul 12;14(7):414. doi: 10.1038/s41419-023-05855-4.
10
Single-nucleus RNA sequencing of pre-malignant liver reveals disease-associated hepatocyte state with HCC prognostic potential.癌前肝脏的单核RNA测序揭示了与疾病相关的具有肝癌预后潜力的肝细胞状态。
Cell Genom. 2023 Apr 13;3(5):100301. doi: 10.1016/j.xgen.2023.100301. eCollection 2023 May 10.