文献检索文档翻译深度研究
Suppr Zotero 插件Zotero 插件
邀请有礼套餐&价格历史记录

新学期,新优惠

限时优惠:9月1日-9月22日

30天高级会员仅需29元

1天体验卡首发特惠仅需5.99元

了解详情
不再提醒
插件&应用
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
高级版
套餐订阅购买积分包
AI 工具
文献检索文档翻译深度研究
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2025

通过酿酒酵母中工程化的V(D)J样重组产生组合多样性。

Generating combinatorial diversity via engineered V(D)J-like recombination in Saccharomyces cerevisiae.

作者信息

Cazier Andrew P, Son Jaewoo, Yellayi Sreenivas, Chavez Lizmarie S, Young Caden, Irvin Olivia M, Abraham Hannah, Dalvi Saachi, Blazeck John

机构信息

School of Chemical and Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA, USA.

Parker H. Petit Institute of Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, GA, USA.

出版信息

Nat Commun. 2025 Jul 1;16(1):5688. doi: 10.1038/s41467-025-61206-1.


DOI:10.1038/s41467-025-61206-1
PMID:40592886
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12216023/
Abstract

V(D)J recombination is integral to the development of antibody diversity and proceeds through a complex DNA cleavage and repair process mediated by several proteins, including recombination-activating genes 1 and 2, RAG1 and RAG2. V(D)J recombination occurs in all jawed vertebrates but is absent from evolutionarily distant relatives, including the yeast Saccharomyces cerevisiae. As yeast grow quickly and are a platform for antibody display, engineering yeast to undergo V(D)J recombination could expand their applicability for studying antibody development. Therefore, in this work we incorporate RAG1 and RAG2 into yeast and characterize the resulting recombination ability using a split antibiotic resistance assay, demonstrating successful homology-assisted formation of coding joints. By pursuing a variety of strategies, we increase the rate of homology-assisted recombination by over 7000-fold, with the best rates approaching 1% recombination after four days. We further show that our platform can assay the severity of several disease-causing RAG1 mutations. Finally, we use our engineered yeast to simultaneously generate up to three unique fluorescent proteins or two distinct antibody fragments starting from an array of nonfunctional gene fragments, which we believe to be the first-ever generation of genetic and phenotypic diversity solely using random recombination of preexisting DNA in a non-vertebrate cell.

摘要

V(D)J重排是抗体多样性产生所必需的过程,它通过由几种蛋白质介导的复杂DNA切割和修复过程进行,这些蛋白质包括重组激活基因1和2(RAG1和RAG2)。V(D)J重排发生在所有有颌脊椎动物中,但在进化关系较远的物种中不存在,包括酿酒酵母。由于酵母生长迅速且是抗体展示的平台,对酵母进行工程改造使其能够进行V(D)J重排,可以扩大其在抗体发育研究中的应用范围。因此,在这项工作中,我们将RAG1和RAG2引入酵母,并使用分裂抗生素抗性测定法来表征由此产生的重排能力,证明了编码接头的同源性辅助形成成功。通过采用多种策略,我们将同源性辅助重排的速率提高了7000多倍,四天后最佳速率接近1%的重排率。我们进一步表明,我们的平台可以检测几种致病RAG1突变的严重程度。最后,我们使用我们改造后的酵母,从一系列无功能的基因片段开始,同时生成多达三种独特的荧光蛋白或两种不同的抗体片段,我们认为这是首次仅利用非脊椎动物细胞中现有DNA的随机重组产生遗传和表型多样性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b51/12216023/8c0408131cce/41467_2025_61206_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b51/12216023/35d89d11f8a2/41467_2025_61206_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b51/12216023/7299771ef1d2/41467_2025_61206_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b51/12216023/b1f56147ee43/41467_2025_61206_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b51/12216023/6e9b1950ed1a/41467_2025_61206_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b51/12216023/759b20b912ed/41467_2025_61206_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b51/12216023/6dabfbf568d7/41467_2025_61206_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b51/12216023/8c0408131cce/41467_2025_61206_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b51/12216023/35d89d11f8a2/41467_2025_61206_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b51/12216023/7299771ef1d2/41467_2025_61206_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b51/12216023/b1f56147ee43/41467_2025_61206_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b51/12216023/6e9b1950ed1a/41467_2025_61206_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b51/12216023/759b20b912ed/41467_2025_61206_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b51/12216023/6dabfbf568d7/41467_2025_61206_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b51/12216023/8c0408131cce/41467_2025_61206_Fig7_HTML.jpg

相似文献

[1]
Generating combinatorial diversity via engineered V(D)J-like recombination in Saccharomyces cerevisiae.

Nat Commun. 2025-7-1

[2]
Management of urinary stones by experts in stone disease (ESD 2025).

Arch Ital Urol Androl. 2025-6-30

[3]
Factors that influence parents' and informal caregivers' views and practices regarding routine childhood vaccination: a qualitative evidence synthesis.

Cochrane Database Syst Rev. 2021-10-27

[4]
Survivor, family and professional experiences of psychosocial interventions for sexual abuse and violence: a qualitative evidence synthesis.

Cochrane Database Syst Rev. 2022-10-4

[5]
Falls prevention interventions for community-dwelling older adults: systematic review and meta-analysis of benefits, harms, and patient values and preferences.

Syst Rev. 2024-11-26

[6]
Systemic pharmacological treatments for chronic plaque psoriasis: a network meta-analysis.

Cochrane Database Syst Rev. 2021-4-19

[7]
Signs and symptoms to determine if a patient presenting in primary care or hospital outpatient settings has COVID-19.

Cochrane Database Syst Rev. 2022-5-20

[8]
Systemic pharmacological treatments for chronic plaque psoriasis: a network meta-analysis.

Cochrane Database Syst Rev. 2020-1-9

[9]
Interventions to reduce harm from continued tobacco use.

Cochrane Database Syst Rev. 2016-10-13

[10]
Building a neural network model to define DNA sequence specificity in V(D)J recombination.

Nucleic Acids Res. 2025-6-20

本文引用的文献

[1]
Lack of activity of HIV-1 integrase strand-transfer inhibitors on recombinase activating gene (RAG) activity at clinically relevant concentrations.

Microbiol Spectr. 2025-1-7

[2]
A Rapid Antibody Enhancement Platform in Using an Improved, Diversifying CRISPR Base Editor.

ACS Synth Biol. 2023-11-17

[3]
Targeting of Hmo1 to subcompartments of the budding yeast nucleolus.

Mol Biol Cell. 2023-3-1

[4]
An updated definition of V(D)J recombination signal sequences revealed by high-throughput recombination assays.

Nucleic Acids Res. 2022-11-11

[5]
Dynamics of the Artemis and DNA-PKcs Complex in the Repair of Double-Strand Breaks.

J Mol Biol. 2022-12-15

[6]
Humanized yeast to model human biology, disease and evolution.

Dis Model Mech. 2022-6-1

[7]
V(D)J Recombination: Recent Insights in Formation of the Recombinase Complex and Recruitment of DNA Repair Machinery.

Front Cell Dev Biol. 2022-4-29

[8]
Structural insights into the evolution of the RAG recombinase.

Nat Rev Immunol. 2022-6

[9]
Rapid generation of potent antibodies by autonomous hypermutation in yeast.

Nat Chem Biol. 2021-10

[10]
Understanding the human antibody repertoire.

MAbs. 2020

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

推荐工具

医学文档翻译智能文献检索