文献检索文档翻译深度研究
Suppr Zotero 插件Zotero 插件
邀请有礼套餐&价格历史记录

新学期,新优惠

限时优惠:9月1日-9月22日

30天高级会员仅需29元

1天体验卡首发特惠仅需5.99元

了解详情
不再提醒
插件&应用
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
高级版
套餐订阅购买积分包
AI 工具
文献检索文档翻译深度研究
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2025

利用多组学和单细胞分析鉴定动脉粥样硬化中焦亡相关基因和亚型

Identification of pyroptosis related genes and subtypes in atherosclerosis using multiomic and single cell analysis.

作者信息

Jiang Kaisheng, He Yang, Hu Bingjie, Quan Li, Peng Longyun, Tian Juntao, Zhou Nan, Huang Erwen, Zhao Qianhao

机构信息

Faculty of Forensic Medicine, Guangdong Province Translational Forensic Medicine Engineering Technology Research Center, Zhongshan School of Medicine, Sun Yat-Sen University, Guangzhou, 510080, People's Republic of China.

Division of Forensic Medicine, Department of Pathology, School of Basic Medical Sciences, Guangzhou Medical University, Guangzhou, 511436, People's Republic of China.

出版信息

Sci Rep. 2025 Jul 1;15(1):22360. doi: 10.1038/s41598-025-04398-2.


DOI:10.1038/s41598-025-04398-2
PMID:40592922
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12218848/
Abstract

Atherosclerosis (AS), the leading cause of cardiovascular diseases, is a chronic inflammatory disorder involving lipid metabolism, immune dysregulation, and cell death. Pyroptosis, a form of inflammatory programmed cell death, is implicated in AS progression, yet its molecular mechanisms and therapeutic potential remain incompletely understood. A multi-omics framework integrating transcriptomics, single-cell RNA sequencing, and machine learning to identify and prioritize pyroptosis-related genes (PRGs) in AS. Functional enrichment, immune infiltration profiling, and protein-protein interaction network analyses were conducted. Experimental validation was conducted using in vitro and in vivo models. Thirty-six PRGs were identified, with TREM2, TNF, MMP9, IL1B, and CASP1 emerging as key regulators of pyroptosis and inflammation. These PRGs demonstrated robust diagnostic potential in internal and external datasets. Immune infiltration analysis stratified AS patients into subtypes, with Cluster 2 characterized by elevated macrophage pyroptosis and a pro-inflammatory immune microenvironment. Single-cell analysis confirmed TREM2 upregulation in macrophages and monocytes, linking it to immune activation and plaque instability. Experimental validation revealed TREM2's dual role in promoting macrophage lipid accumulation and pyroptosis. This study establishes PRGs, particularly TREM2, as critical modulators of AS progression. These findings enhance our understanding of pyroptosis in AS and provide a framework for developing PRG-based diagnostic and therapeutic strategies.

摘要

动脉粥样硬化(AS)是心血管疾病的主要病因,是一种涉及脂质代谢、免疫失调和细胞死亡的慢性炎症性疾病。细胞焦亡是一种炎症程序性细胞死亡形式,与AS进展有关,但其分子机制和治疗潜力仍未完全了解。本研究采用多组学框架,整合转录组学、单细胞RNA测序和机器学习,以识别AS中与细胞焦亡相关的基因(PRG)并对其进行优先级排序。进行了功能富集、免疫浸润分析和蛋白质-蛋白质相互作用网络分析。使用体外和体内模型进行了实验验证。共鉴定出36个PRG,其中TREM2、TNF、MMP9、IL1B和CASP1成为细胞焦亡和炎症的关键调节因子。这些PRG在内部和外部数据集中显示出强大的诊断潜力。免疫浸润分析将AS患者分为不同亚型,其中Cluster 2的特征是巨噬细胞焦亡增加和促炎免疫微环境。单细胞分析证实巨噬细胞和单核细胞中TREM2上调,将其与免疫激活和斑块不稳定联系起来。实验验证揭示了TREM2在促进巨噬细胞脂质积累和细胞焦亡中的双重作用。本研究确定PRG,尤其是TREM2,是AS进展的关键调节因子。这些发现加深了我们对AS中细胞焦亡的理解,并为开发基于PRG的诊断和治疗策略提供了框架。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da83/12218848/d71fc1173858/41598_2025_4398_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da83/12218848/998fa5f091b8/41598_2025_4398_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da83/12218848/5337bc028625/41598_2025_4398_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da83/12218848/2810be4c6bd1/41598_2025_4398_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da83/12218848/c6317596d50f/41598_2025_4398_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da83/12218848/346b0533013c/41598_2025_4398_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da83/12218848/d71fc1173858/41598_2025_4398_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da83/12218848/998fa5f091b8/41598_2025_4398_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da83/12218848/5337bc028625/41598_2025_4398_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da83/12218848/2810be4c6bd1/41598_2025_4398_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da83/12218848/c6317596d50f/41598_2025_4398_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da83/12218848/346b0533013c/41598_2025_4398_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da83/12218848/d71fc1173858/41598_2025_4398_Fig6_HTML.jpg

相似文献

[1]
Identification of pyroptosis related genes and subtypes in atherosclerosis using multiomic and single cell analysis.

Sci Rep. 2025-7-1

[2]
Bridging aging, immunity, and atherosclerosis: novel insights into senescence-related genes.

Front Immunol. 2025-6-19

[3]
Identification and validation of a KRAS-macrophage-associated gene signature as prognostic biomarkers and potential therapeutic targets in melanoma.

Front Immunol. 2025-6-18

[4]
Comprehensive single-cell chromatin and transcriptomic profiling of peripheral immune cells in nonsegmental vitiligo.

Br J Dermatol. 2025-6-20

[5]
Galactin-8 DNA methylation mediates macrophage autophagy through the MAPK/mTOR pathway to alleviate atherosclerosis.

Sci Rep. 2025-1-2

[6]
Single nuclei RNA-sequencing unveils alveolar macrophages as drivers of endothelial damage in obese HFpEF-related pulmonary hypertension.

Cardiovasc Diabetol. 2025-7-3

[7]
TREM2 as a regulator of obesity-induced cardiac remodeling: mechanisms and therapeutic insights.

Am J Physiol Heart Circ Physiol. 2025-5-1

[8]
Comprehensive bioinformatics analysis of the common mechanism of atherosclerosis and atrial fibrillation: emphasizing mitochondrial metabolic disorder and immune inflammation.

Front Mol Biosci. 2025-6-18

[9]
Integrative multi-omics analysis of IFNγ-induced macrophages and atherosclerotic plaques reveals macrophage-dependent STAT1-driven transcription in atherosclerosis.

Front Immunol. 2025-6-18

[10]
Deciphering Shared Gene Signatures and Immune Infiltration Characteristics Between Gestational Diabetes Mellitus and Preeclampsia by Integrated Bioinformatics Analysis and Machine Learning.

Reprod Sci. 2025-5-15

本文引用的文献

[1]
Adiponectin deficiency prevents chronic colitis-associated colonic fibrosis via inhibiting CXCL13 production.

J Adv Res. 2024-12-24

[2]
TREM2 protects from atherosclerosis by limiting necrotic core formation.

Nat Cardiovasc Res. 2024-3

[3]
Challenges and advances in the management of inflammation in atherosclerosis.

J Adv Res. 2025-5

[4]
Trem2 promotes foamy macrophage lipid uptake and survival in atherosclerosis.

Nat Cardiovasc Res. 2023-11

[5]
The dance of macrophage death: the interplay between the inevitable and the microenvironment.

Front Immunol. 2024

[6]
Unveiling the role of ABI3 and hub senescence-related genes in macrophage senescence for atherosclerotic plaque progression.

Inflamm Res. 2024-1

[7]
Mitochondria-associated programmed cell death as a therapeutic target for age-related disease.

Exp Mol Med. 2023-8

[8]
Pyroptosis-induced inflammation and tissue damage.

Semin Immunol. 2023-9

[9]
TREM2 promotes cholesterol uptake and foam cell formation in atherosclerosis.

Cell Mol Life Sci. 2023-5-3

[10]
GSDME-mediated pyroptosis promotes the progression and associated inflammation of atherosclerosis.

Nat Commun. 2023-2-18

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

推荐工具

医学文档翻译智能文献检索