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运用网络药理学和分子模拟探索羟氯喹减少IgA肾病蛋白尿的机制。

Exploring the mechanism of proteinuria reduction by hydroxychloroquine in IgA nephropathy using network pharmacology and molecular mocking.

作者信息

Lu Meiqi, Wang Yuxin, Wan Zheng, Chen Yixuan, Lin Mengshu, Deng Xiaoqi, Su Xiaoxia, Gao Qing

机构信息

Department of Nephrology, Zhongshan Hospital of Xiamen University, School of Medicine, Xiamen University, Xiamen, China.

Department of Nephrology, Xiang'an Hospital of Xiamen University, School of Medicine, Xiamen University, Xiamen, China.

出版信息

Sci Rep. 2025 Jul 1;15(1):20836. doi: 10.1038/s41598-025-97950-z.

Abstract

According to the 2021 KDIGO guidelines, hydroxychloroquine (HCQ) had been recommended for the treatment of IgA nephropathy (IgAN). However, the precise mechanisms by which HCQ ameliorated proteinuria in IgAN were not fully understood. This study investigated the potential mechanisms of HCQ in reducing proteinuria in IgAN using network pharmacology and molecular docking approaches. Targets associated with IgAN, proteinuria, and HCQ were identified from databases including DisGeNET, GeneCards, OMIM, and PharmMapper. GO and KEGG analyses were conducted using the DAVID platform. Protein-protein interaction (PPI) networks were constructed using the STRING database, and hub genes were identified using Cytoscape software. The selection of hub genes was corroborated with data from the GEO database and validated through molecular docking. Additionally, miRNAs were predicted using NetworkAnalyst. A total of 48 genes were identified as being associated with the reduction of proteinuria in IgAN. The findings suggested that HCQ's mechanism of action in mitigating proteinuria in IgAN primarily involved pathways related to inflammation. Furthermore, this mechanism was linked to the regulatory effects of miR-130b-3p on the expression of genes such as MMP2, IGF1, and PPARG. HCQ targeted miR-130b-3p, thereby influencing the TLR/MyD88/NF-κB signaling pathway and modulating the expression of MMP2, IGF1, and PPARG. This action may have been responsible for the observed reduction in proteinuria associated with IgAN.

摘要

根据2021年改善全球肾脏病预后组织(KDIGO)指南,羟氯喹(HCQ)已被推荐用于治疗IgA肾病(IgAN)。然而,HCQ改善IgAN蛋白尿的确切机制尚未完全明确。本研究采用网络药理学和分子对接方法,探究HCQ降低IgAN蛋白尿的潜在机制。从包括DisGeNET、GeneCards、OMIM和PharmMapper等数据库中识别出与IgAN、蛋白尿和HCQ相关的靶点。使用DAVID平台进行基因本体(GO)和京都基因与基因组百科全书(KEGG)分析。利用STRING数据库构建蛋白质-蛋白质相互作用(PPI)网络,并使用Cytoscape软件识别枢纽基因。枢纽基因的选择通过基因表达综合数据库(GEO)的数据进行佐证,并通过分子对接进行验证。此外,使用NetworkAnalyst预测微小RNA(miRNA)。共鉴定出48个与IgAN蛋白尿减少相关的基因。研究结果表明,HCQ减轻IgAN蛋白尿的作用机制主要涉及炎症相关通路。此外,该机制与miR-130b-3p对基质金属蛋白酶2(MMP2)、胰岛素样生长因子1(IGF1)和过氧化物酶体增殖物激活受体γ(PPARG)等基因表达的调控作用有关。HCQ靶向miR-130b-3p,从而影响Toll样受体(TLR)/髓样分化因子88(MyD88)/核因子κB(NF-κB)信号通路,并调节MMP2、IGF1和PPARG的表达。这一作用可能是观察到的与IgAN相关的蛋白尿减少的原因。

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