Shao Cuiping, Xu Youqing
Department of Gastroenterology, Beijing Tiantan Hospital, Capital Medical University, No. 119, Nan Si Huan West Road, Fengtai District, Beijing, 100070, China.
Sci Rep. 2025 Jul 1;15(1):20593. doi: 10.1038/s41598-025-07612-3.
To investigate the potential pathogenesis of metabolic dysfunction-associated steatotic liver disease (MASLD) by using bioinformatics approaches. Data from three MASLD-related datasets (GSE89632, GSE72756 and GSE49541) were downloaded from the Gene Expression Omnibus (GEO) database and merged for analysis. Differentially expressed genes (DEGs) were identified via the limma package in R (|logFC|> 1, adjusted p value < 0.05). Functional enrichment analysis was conducted via Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways and gene set enrichment analysis (GSEA). Protein‒protein interaction (PPI) network analysis was used to identify hub genes related to MASLD. 1278 DEGs (1238 upregulated, 40 downregulated) related to MASLD were identified. GO analysis revealed that the DEGs were involved mainly in the regulation of membrane potential (BP), the monoatomic ion channel complex (CC) and postsynaptic neurotransmitter receptor activity (MF). KEGG analysis highlighted neuroactive ligand-receptor interactions and taste transduction pathways, which were downregulated in MASLD. PPI network analysis identified 10 hub genes: PIK3CD, PIK3R2, PIK3R1, PIK3R3, PIK3CB, PIK3CA, SRC, PIK3CG, PIK3R5 and PIK3R6. This study identified 10 hub genes associated with MASLD, primarily involved in the PI3K/AKT signaling pathway, which could serve as biomarkers for MASLD diagnosis and progression, with the pathway potentially becoming a new therapeutic target.
利用生物信息学方法研究代谢功能障碍相关脂肪性肝病(MASLD)的潜在发病机制。从基因表达综合数据库(GEO)下载了三个与MASLD相关的数据集(GSE89632、GSE72756和GSE49541)的数据,并进行合并分析。通过R语言中的limma软件包识别差异表达基因(DEG)(|logFC|> 1,校正p值<0.05)。通过基因本体论(GO)、京都基因与基因组百科全书(KEGG)通路和基因集富集分析(GSEA)进行功能富集分析。利用蛋白质-蛋白质相互作用(PPI)网络分析来识别与MASLD相关的枢纽基因。共识别出1278个与MASLD相关的DEG(1238个上调,40个下调)。GO分析显示,这些DEG主要参与膜电位调节(生物学过程)、单原子离子通道复合体(细胞组分)和突触后神经递质受体活性(分子功能)。KEGG分析突出了神经活性配体-受体相互作用和味觉转导通路,这些通路在MASLD中下调。PPI网络分析确定了10个枢纽基因:PIK3CD、PIK3R2、PIK3R1、PIK3R3、PIK3CB、PIK3CA、SRC、PIK3CG、PIK3R5和PIK3R6。本研究确定了10个与MASLD相关的枢纽基因,主要参与PI3K/AKT信号通路,这些基因可作为MASLD诊断和病情进展的生物标志物,该通路可能成为新的治疗靶点。
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