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通过机器学习和免疫分析确定CXCR4作为透明细胞肾细胞癌潜在预防基因

Identification of CXCR4 as a potential preventive gene in clear cell renal cell carcinoma from machine learning and immune analysis.

作者信息

Hu Fengming, Wang Xiao, Wu Runsheng, Liu Sihong, Liu Hongli, Dai Ranran

机构信息

Department of Urology, Shenzhen Pingle Orthopedic Hospital (Shenzhen Pingshan Traditional Chinese Medicine Hospital), Shenzhen, 518118, Guangdong, China.

Department of Organ Transplantation, The Affiliated Guangdong Second Provincial General Hospital of Jinan University, Guangzhou, Guangdong, China.

出版信息

Sci Rep. 2025 Jul 1;15(1):21321. doi: 10.1038/s41598-025-08199-5.

Abstract

Clear cell renal cell carcinoma (ccRCC) represents a prevalent malignant kidney tumor characterized by high metastatic potential and recurrence rates. Investigations into the molecular mechanisms and therapeutic targets of ccRCC have provided novel directions for early diagnosis and targeted therapy. The CXCR4 gene plays a pivotal role in tumor progression and metastasis. In this study, this study first conducted differential analysis and WGCNA analysis on the dataset, and performed GO and KEGG analysis on the differentially expressed genes, revealing key biological processes and signaling pathways, particularly in cell adhesion and immune regulation. Based on WGCNA and cross genes of differentially expressed genes, 50 central genes were identified through PPI analysis. LASSO, SVM-RFE, and RF algorithms are used to identify the key gene CXCR4 associated with ccRCC. Survival analysis revealed that high CXCR4 expression correlates with poor patient prognosis. Immune analysis highlighted differences in immune cell distribution across ccRCC subtypes, emphasizing the importance of gene-immune interactions in disease pathogenesis. Finally, validation was conducted in vitro using techniques such as PCR and Western blot. Our findings position CXCR4 as a potential preventive gene, offering new theoretical insights for early diagnosis and targeted treatment of ccRCC.

摘要

透明细胞肾细胞癌(ccRCC)是一种常见的恶性肾肿瘤,具有高转移潜能和复发率。对ccRCC分子机制和治疗靶点的研究为早期诊断和靶向治疗提供了新方向。CXCR4基因在肿瘤进展和转移中起关键作用。在本研究中,首先对数据集进行差异分析和WGCNA分析,并对差异表达基因进行GO和KEGG分析,揭示关键生物学过程和信号通路,特别是在细胞黏附和免疫调节方面。基于WGCNA和差异表达基因的交叉基因,通过PPI分析鉴定出50个核心基因。使用LASSO、SVM - RFE和RF算法鉴定与ccRCC相关的关键基因CXCR4。生存分析显示,CXCR4高表达与患者预后不良相关。免疫分析突出了ccRCC亚型间免疫细胞分布的差异,强调了基因 - 免疫相互作用在疾病发病机制中的重要性。最后,使用PCR和蛋白质免疫印迹等技术在体外进行验证。我们的研究结果将CXCR4定位为潜在的预防基因,为ccRCC的早期诊断和靶向治疗提供了新的理论见解。

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