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通过综合生物信息学和机器学习分析鉴定非小细胞肺癌中与外泌体相关的基因

Identification of exosome-related genes in NSCLC via integrated bioinformatics and machine learning analysis.

作者信息

Sun Zhenjie, Du Tianyu, Yang Guosheng, Sun Yinghuan, Xiao Xuyang

机构信息

Department of Thoracic Surgery, The First Affiliated Hospital of Jinzhou Medical University, Jinzhou, 121001, China.

出版信息

Sci Rep. 2025 Jul 2;15(1):22962. doi: 10.1038/s41598-025-04485-4.

DOI:10.1038/s41598-025-04485-4
PMID:40595797
Abstract

Exosomes are crucial in the development of non-small cell lung cancer (NSCLC), yet exosome-associated genes in NSCLC remain insufficiently explored. The present study identified 59 exosome-associated differentially expressed genes (EA-DEGs) from the Gene Expression Omnibus (GEO) and GeneCards databases. Functional analysis indicated the involvement of the EA-DEGs in NSCLC-related pathways, including the cell cycle, DNA replication, and the immune response. Logistic regression, Least Absolute Shrinkage and Selection Operator (LASSO), support vector machine-recursive feature elimination (SVM-RFE), and random forest (RF) models were used to identify four key biomarkers, namely, PAICS, SLC2A1, A2M, and GPM6A, with diagnostic potential. Gene expression, pathological staging, and prognosis were analyzed in the lung adenocarcinoma (LUAD) subtype. Potential drugs targeting these biomarkers were identified, and an RNA-binding protein (RBP) and transcription factor (TF) regulatory network was constructed. Single-sample Gene Set Enrichment Analysis (ssGSEA) analysis highlighted the involvement of changes in the immune microenvironment. A diagnostic model providing new insight into the molecular mechanisms underlying NSCLC is proposed. However, further experimental verification is required to assess its practical value for NSCLC and other lung cancer subtypes before clinical application.

摘要

外泌体在非小细胞肺癌(NSCLC)的发展中至关重要,但NSCLC中与外泌体相关的基因仍未得到充分研究。本研究从基因表达综合数据库(GEO)和基因卡片数据库中鉴定出59个与外泌体相关的差异表达基因(EA-DEGs)。功能分析表明,EA-DEGs参与了NSCLC相关通路,包括细胞周期、DNA复制和免疫反应。使用逻辑回归、最小绝对收缩和选择算子(LASSO)、支持向量机递归特征消除(SVM-RFE)和随机森林(RF)模型来识别四个具有诊断潜力的关键生物标志物,即PAICS、SLC2A1、A2M和GPM6A。对肺腺癌(LUAD)亚型进行了基因表达、病理分期和预后分析。确定了靶向这些生物标志物的潜在药物,并构建了一个RNA结合蛋白(RBP)和转录因子(TF)调控网络。单样本基因集富集分析(ssGSEA)突出了免疫微环境变化的参与情况。提出了一个为NSCLC潜在分子机制提供新见解的诊断模型。然而,在临床应用之前,需要进一步的实验验证来评估其对NSCLC和其他肺癌亚型的实际价值。

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本文引用的文献

1
Clinical Applications of Exosomes: A Critical Review.外泌体的临床应用:综述评价。
Int J Mol Sci. 2024 Jul 16;25(14):7794. doi: 10.3390/ijms25147794.
2
Global cancer statistics 2022: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.2022 年全球癌症统计数据:全球 185 个国家和地区 36 种癌症的发病率和死亡率全球估计数。
CA Cancer J Clin. 2024 May-Jun;74(3):229-263. doi: 10.3322/caac.21834. Epub 2024 Apr 4.
3
Identification of SLC2A1 as a predictive biomarker for survival and response to immunotherapy in lung squamous cell carcinoma.
鉴定 SLC2A1 作为肺鳞状细胞癌生存和免疫治疗反应的预测性生物标志物。
Comput Biol Med. 2024 Mar;171:108183. doi: 10.1016/j.compbiomed.2024.108183. Epub 2024 Feb 22.
4
Cancer statistics, 2024.2024年癌症统计数据。
CA Cancer J Clin. 2024 Jan-Feb;74(1):12-49. doi: 10.3322/caac.21820. Epub 2024 Jan 17.
5
Identification and prognostic biomarkers among ZDHHC4/12/18/24, and APT2 in lung adenocarcinoma.在肺腺癌中 ZDHHC4/12/18/24 和 APT2 的鉴定和预后生物标志物。
Sci Rep. 2024 Jan 4;14(1):522. doi: 10.1038/s41598-024-51182-9.
6
Identifying and Validating GSTM5 as an Immunogenic Gene in Diabetic Foot Ulcer Using Bioinformatics and Machine Learning.利用生物信息学和机器学习鉴定并验证GSTM5作为糖尿病足溃疡中的免疫原性基因
J Inflamm Res. 2023 Dec 20;16:6241-6256. doi: 10.2147/JIR.S442388. eCollection 2023.
7
The Early Diagnosis of Lung Cancer: Critical Gaps in the Discovery of Biomarkers.肺癌的早期诊断:生物标志物发现中的关键差距
J Clin Med. 2023 Nov 23;12(23):7244. doi: 10.3390/jcm12237244.
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BMC Pulm Med. 2023 Oct 10;23(1):383. doi: 10.1186/s12890-023-02684-1.
9
Unveiling the key genes, environmental toxins, and drug exposures in modulating the severity of ulcerative colitis: a comprehensive analysis.揭示调节溃疡性结肠炎严重程度的关键基因、环境毒素和药物暴露:综合分析。
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