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NMD核心因子UPF1在低级别胶质瘤中的预后意义

The prognostic significance of the NMD core factor UPF1 in low-grade glioma.

作者信息

Yang Shuo, Wu Na, Duan Yumeng, Qi Shasha, Yuan Shuo, Lu Huixia

机构信息

Dali Bai Autonomous Prefecture, Clinical Medicine College of Dali University, Dali Bai Autonomous Prefecture, Dali City, Yunnan Province, China.

出版信息

Sci Rep. 2025 Jul 1;15(1):20574. doi: 10.1038/s41598-025-05711-9.


DOI:10.1038/s41598-025-05711-9
PMID:40596043
Abstract

Low-grade glioma (LGG) frequently occurring in children and adolescents. Upstream frameshift protein 1 (UPF1) is involved in nonsense-mediated mRNA decay (NMD), in LGG progression and tumor invasion remains unclear. Data from The Cancer Genome Atlas (TCGA) and GTEx were analyzed to compare UPF1 expression in normal and cancer tissues. Protein levels were studied using the Human Protein Atlas (HPA). Gene enrichment analyses were performed, alongside genetic, methylation, immune infiltration, and clinicopathological evaluations. Kaplan-Meier (KM) and receiver operating characteristic (ROC) curve analyses assessed UPF1's prognostic value, and a nomogram for survival prediction was developed. UPF1 mRNA and protein levels were significantly higher in LGG tissues (P < 0.05). UPF1 expression was linked to tumor microenvironment and immune cell-related pathways. Genetic alterations in UPF1 impacted overall survival (OS), rather than disease-free survival. DNA methylation patterns of UPF1 had significant prognostic value. UPF1 expression level was correlated with immune cell infiltration (e.g., B cells, CD4 + T cells, macrophages). High UPF1 expression, advanced grade, gene mutations, older age, and unfavorable treatment outcomes were associated with poor OS (P < 0.05). The nomogram based on six risk factors exhibited moderate accuracy (AUC1-year = 0.680). UPF1 is a potential biomarker for tumor immune infiltration and prognosis in LGG patients.

摘要

低级别胶质瘤(LGG)常见于儿童和青少年。上游移码蛋白1(UPF1)参与无义介导的mRNA衰变(NMD),其在LGG进展和肿瘤侵袭中的作用尚不清楚。分析了来自癌症基因组图谱(TCGA)和基因型组织表达(GTEx)的数据,以比较UPF1在正常组织和癌组织中的表达。使用人类蛋白质图谱(HPA)研究蛋白质水平。进行了基因富集分析,以及基因、甲基化、免疫浸润和临床病理评估。采用Kaplan-Meier(KM)和受试者工作特征(ROC)曲线分析评估UPF1的预后价值,并绘制了生存预测列线图。UPF1的mRNA和蛋白质水平在LGG组织中显著更高(P < 0.05)。UPF1表达与肿瘤微环境和免疫细胞相关途径有关。UPF1的基因改变影响总生存期(OS),而非无病生存期。UPF1的DNA甲基化模式具有显著的预后价值。UPF1表达水平与免疫细胞浸润(如B细胞、CD4+T细胞、巨噬细胞)相关。UPF1高表达、高级别、基因突变、年龄较大和不良治疗结果与较差的OS相关(P < 0.05)。基于六个风险因素的列线图显示出中等准确性(AUC1年=0.680)。UPF1是LGG患者肿瘤免疫浸润和预后的潜在生物标志物。

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The prognostic significance of the NMD core factor UPF1 in low-grade glioma.

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本文引用的文献

[1]
KEGG: biological systems database as a model of the real world.

Nucleic Acids Res. 2025-1-6

[2]
UPF1 plays critical roles in early B cell development.

Nat Commun. 2024-7-9

[3]
Advances in molecular function of UPF1 in Cancer.

Arch Biochem Biophys. 2024-6

[4]
MET Inhibitor Capmatinib Radiosensitizes MET Exon 14-Mutated and MET-Amplified Non-Small Cell Lung Cancer.

Int J Radiat Oncol Biol Phys. 2024-4-1

[5]
Focusing on scRNA-seq-Derived T Cell-Associated Genes to Identify Prognostic Signature and Immune Microenvironment Status in Low-Grade Glioma.

Mediators Inflamm. 2023

[6]
The roles and implications of RNA mA modification in cancer.

Nat Rev Clin Oncol. 2023-8

[7]
The methylation level of a single cancer risk marker gene reflects methylation burden in gastric mucosa.

Gastric Cancer. 2023-9

[8]
Glioblastoma and Other Primary Brain Malignancies in Adults: A Review.

JAMA. 2023-2-21

[9]
MiR-101: An Important Regulator of Gene Expression and Tumor Ecosystem.

Cancers (Basel). 2022-11-28

[10]
Identification and Validation of UPF1 as a Novel Prognostic Biomarker in Renal Clear Cell Carcinoma.

Genes (Basel). 2022-11-20

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