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用于体内高效基因沉默的工程化微小RNA支架

Engineered microRNA scaffolds for potent gene silencing in vivo.

作者信息

Militello Giuseppe, Greig Alyssa, Bi Chongfeng, Vasileva Ana, Zavodszky Maria I, Lo Shih-Ching, Guilmette Edward, Clarner Pete, Liu Bin, Bhat Guruharsha, Suh Junghae, Dow Lukas, Zuber Johannes, Fellmann Christof, Premsrirut Prem K

机构信息

Mirimus Inc., 760 Parkside Avenue, Suite 206, Brooklyn, NY, 11226, USA.

SUNY Downstate Medical Center, 450 Clarkson Ave, Brooklyn, NY, 11203, USA.

出版信息

Sci Rep. 2025 Jul 1;15(1):21419. doi: 10.1038/s41598-025-07061-y.

DOI:10.1038/s41598-025-07061-y
PMID:40596504
Abstract

RNA interference (RNAi) is emerging as a powerful strategy for therapeutic targeting of "undruggable" targets. However, efficacy of currently used siRNA-based therapies is often hindered by transient effects and limited modeling possibilities. Artificial microRNAs (amiRNAs or miRNA scaffolds) present a durable and precise approach to gene silencing, opening new avenues for developing long lasting targeted therapies. In this study, we engineered highly expressed primary miRNAs (pri-miRNAs) with sequence determinants known to enhance processing efficacy and precision. The resulting amiRNAs were extensively tested both in vitro and in vivo and proved to efficiently silence a target gene when virally delivered via adeno-associated virus (AAV) into mice brains. This study provides a set of novel amiRNAs with potential therapeutic application as well as a pipeline to generate and validate novel amiRNAs from endogenous pri-miRNAs.

摘要

RNA干扰(RNAi)正成为一种针对“不可成药”靶点进行治疗性靶向的强大策略。然而,目前基于小干扰RNA(siRNA)的疗法的疗效常常受到短暂效应和有限建模可能性的阻碍。人工微小RNA(amiRNA或miRNA支架)为基因沉默提供了一种持久且精确的方法,为开发长效靶向疗法开辟了新途径。在本研究中,我们设计了具有已知可提高加工效率和精度的序列决定因素的高表达初级微小RNA(pri-miRNA)。所产生的amiRNA在体外和体内都进行了广泛测试,并且当通过腺相关病毒(AAV)病毒递送至小鼠大脑时,证明能有效沉默靶基因。本研究提供了一组具有潜在治疗应用的新型amiRNA,以及从内源性pri-miRNA生成和验证新型amiRNA的流程。

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本文引用的文献

1
Trials and Tribulations of MicroRNA Therapeutics.miRNA 治疗的困境与挑战
Int J Mol Sci. 2024 Jan 25;25(3):1469. doi: 10.3390/ijms25031469.
2
Efficacy and safety of a SOD1-targeting artificial miRNA delivered by AAV9 in mice are impacted by miRNA scaffold selection.由AAV9递送的靶向SOD1的人工miRNA在小鼠中的疗效和安全性受miRNA支架选择的影响。
Mol Ther Nucleic Acids. 2023 Oct 16;34:102057. doi: 10.1016/j.omtn.2023.102057. eCollection 2023 Dec 12.
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25 years of maturation: A systematic review of RNAi in the clinic.25年的发展历程:对临床RNA干扰技术的系统综述
Mol Ther Nucleic Acids. 2023 Jul 18;33:469-482. doi: 10.1016/j.omtn.2023.07.018. eCollection 2023 Sep 12.
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Chemistry, structure and function of approved oligonucleotide therapeutics.已获批的寡核苷酸治疗药物的化学、结构和功能。
Nucleic Acids Res. 2023 Apr 11;51(6):2529-2573. doi: 10.1093/nar/gkad067.
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rAAV immunogenicity, toxicity, and durability in 255 clinical trials: A meta-analysis.rAAV 免疫原性、毒性和持久性的 255 项临床试验的荟萃分析。
Front Immunol. 2022 Oct 27;13:1001263. doi: 10.3389/fimmu.2022.1001263. eCollection 2022.
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NGN2 induces diverse neuron types from human pluripotency.NGN2 可诱导人多能性向多种神经元类型分化。
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RNA structure probing reveals the structural basis of Dicer binding and cleavage.RNA 结构探测揭示了 Dicer 结合和切割的结构基础。
Nat Commun. 2021 Jun 7;12(1):3397. doi: 10.1038/s41467-021-23607-w.
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Artificial miRNAs as therapeutic tools: Challenges and opportunities.人工 miRNA 作为治疗工具:挑战与机遇。
Wiley Interdiscip Rev RNA. 2021 Jul;12(4):e1640. doi: 10.1002/wrna.1640. Epub 2021 Jan 1.
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Identification of a myotropic AAV by massively parallel in vivo evaluation of barcoded capsid variants.通过大规模平行体内评估条形码衣壳变体鉴定肌靶向 AAV。
Nat Commun. 2020 Oct 28;11(1):5432. doi: 10.1038/s41467-020-19230-w.