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基于对比增强乳腺X线摄影的可解释机器学习模型用于预测乳腺癌分子亚型

Contrast-enhanced mammography-based interpretable machine learning model for the prediction of the molecular subtype breast cancers.

作者信息

Ma Mengwei, Xu Weimin, Yang Jun, Zheng Bowen, Wen Chanjuan, Wang Sina, Xu Zeyuan, Qin Genggeng, Chen Weiguo

机构信息

Department of Radiology, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, 510515, China.

出版信息

BMC Med Imaging. 2025 Jul 1;25(1):255. doi: 10.1186/s12880-025-01765-3.

DOI:10.1186/s12880-025-01765-3
PMID:40596940
Abstract

OBJECTIVE

This study aims to establish a machine learning prediction model to explore the correlation between contrast-enhanced mammography (CEM) imaging features and molecular subtypes of mass-type breast cancer.

MATERIALS AND METHODS

This retrospective study included women with breast cancer who underwent CEM preoperatively between 2018 and 2021. We included 241 patients, which were randomly assigned to either a training or a test set in a 7:3 ratio. Twenty-one features were visually described, including four clinical features and seventeen radiological features, these radiological features which extracted from the CEM. Three binary classifications of subtypes were performed: Luminal vs. non-Luminal, HER2-enriched vs. non-HER2-enriched, and triple-negative (TNBC) vs. non-triple-negative. A multinomial naive Bayes (MNB) machine learning scheme was employed for the classification, and the least absolute shrink age and selection operator method were used to select the most predictive features for the classifiers. The classification performance was evaluated using the area under the receiver operating characteristic curve. We also utilized SHapley Additive exPlanation (SHAP) values to explain the prediction model.

RESULTS

The model that used a combination of low energy (LE) and dual-energy subtraction (DES) achieved the best performance compared to using either of the two images alone, yielding an area under the receiver operating characteristic curve of 0.798 for Luminal vs. non-Luminal subtypes, 0.695 for TNBC vs. non-TNBC, and 0.773 for HER2-enriched vs. non-HER2-enriched. The SHAP algorithm shows that "LE_mass_margin_spiculated," "DES_mass_enhanced_margin_spiculated," and "DES_mass_internal_enhancement_homogeneous" have the most significant impact on the model's performance in predicting Luminal and non-Luminal breast cancer. "mass_calcification_relationship_no," "calcification_ type_no," and "LE_mass_margin_spiculated" have a considerable impact on the model's performance in predicting HER2 and non-HER2 breast cancer.

CONCLUSIONS

The radiological characteristics of breast tumors extracted from CEM were found to be associated with breast cancer subtypes in our study. Future research is needed to validate these findings.

摘要

目的

本研究旨在建立一种机器学习预测模型,以探讨乳腺造影增强(CEM)成像特征与肿块型乳腺癌分子亚型之间的相关性。

材料与方法

这项回顾性研究纳入了2018年至2021年间术前接受CEM检查的乳腺癌女性患者。我们纳入了241例患者,按照7:3的比例随机分配到训练集或测试集。通过视觉描述了21个特征,包括4个临床特征和17个放射学特征,这些放射学特征是从CEM中提取的。进行了三种亚型的二元分类:Luminal型与非Luminal型、HER2富集型与非HER2富集型、三阴性(TNBC)与非三阴性。采用多项式朴素贝叶斯(MNB)机器学习方案进行分类,并使用最小绝对收缩和选择算子方法为分类器选择最具预测性的特征。使用受试者操作特征曲线下面积评估分类性能。我们还利用SHapley值加法解释(SHAP)来解释预测模型。

结果

与单独使用两张图像中的任何一张相比,使用低能量(LE)和双能量减影(DES)组合的模型表现最佳,Luminal型与非Luminal型亚型的受试者操作特征曲线下面积为0.798,TNBC与非TNBC为0.695,HER2富集型与非HER2富集型为0.773。SHAP算法表明,“LE_mass_margin_spiculated”“DES_mass_enhanced_margin_spiculated”和“DES_mass_internal_enhancement_homogeneous”对模型预测Luminal型和非Luminal型乳腺癌的性能影响最大。“mass_calcification_relationship_no”“calcification_type_no”和“LE_mass_margin_spiculated”对模型预测HER2型和非HER2型乳腺癌的性能有相当大的影响。

结论

在我们的研究中,发现从CEM中提取的乳腺肿瘤放射学特征与乳腺癌亚型有关。未来需要进一步研究来验证这些发现。

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本文引用的文献

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Diagnosis, Prognosis, and Treatment of Triple-Negative Breast Cancer: A Review.三阴性乳腺癌的诊断、预后及治疗:综述
Breast Cancer (Dove Med Press). 2025 Mar 17;17:265-274. doi: 10.2147/BCTT.S516542. eCollection 2025.
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Enhancing HER2 testing in breast cancer: predicting fluorescence in situ hybridization (FISH) scores from immunohistochemistry images via deep learning.加强乳腺癌中的人表皮生长因子受体2(HER2)检测:通过深度学习从免疫组化图像预测荧光原位杂交(FISH)评分
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Triple-Negative Breast Cancer: Molecular Particularities Still a Challenge.
三阴性乳腺癌:分子特性仍是一项挑战。
Diagnostics (Basel). 2024 Aug 27;14(17):1875. doi: 10.3390/diagnostics14171875.
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The potential role of breast MRI in evaluation of triple-negative breast cancer and fibroadenoma of less than 3 cm.乳腺磁共振成像在评估三阴性乳腺癌及小于3厘米的纤维腺瘤中的潜在作用
Transl Cancer Res. 2024 Aug 31;13(8):4042-4051. doi: 10.21037/tcr-24-498. Epub 2024 Aug 27.
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Investigation of breast cancer molecular subtype in a multi-ethnic population using MRI.应用 MRI 对多民族人群的乳腺癌分子亚型进行研究。
PLoS One. 2024 Aug 29;19(8):e0309131. doi: 10.1371/journal.pone.0309131. eCollection 2024.
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Human epidermal growth factor receptor 2 (HER2) status in breast cancer: practice points and challenges.人表皮生长因子受体 2(HER2)在乳腺癌中的状态:实践要点和挑战。
Histopathology. 2024 Sep;85(3):371-382. doi: 10.1111/his.15213. Epub 2024 Jun 6.
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Contrast-enhanced Mammography versus MR Imaging of the Breast.对比增强乳腺钼靶摄影与乳腺磁共振成像
Radiol Clin North Am. 2024 Jul;62(4):643-659. doi: 10.1016/j.rcl.2024.02.003. Epub 2024 Mar 11.
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SHAP value-based ERP analysis (SHERPA): Increasing the sensitivity of EEG signals with explainable AI methods.基于 SHAP 值的 ERP 分析(SHERPA):利用可解释人工智能方法提高 EEG 信号的灵敏度。
Behav Res Methods. 2024 Sep;56(6):6067-6081. doi: 10.3758/s13428-023-02335-7. Epub 2024 Mar 7.
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Enhancing Ki-67 Prediction in Breast Cancer: Integrating Intratumoral and Peritumoral Radiomics From Automated Breast Ultrasound via Machine Learning.增强乳腺癌 Ki-67 预测:通过机器学习整合自动乳腺超声的肿瘤内和肿瘤周围放射组学。
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Machine learning-based models for the prediction of breast cancer recurrence risk.基于机器学习的乳腺癌复发风险预测模型。
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