Jin Yun, Hu Pingping, Dai Yihe, Gu Wenchao, Han Jiang, Song Haihan
Department of Hepatobiliary Surgery, The First People's Hospital of Yunnan Province, Kunming, Yunnan 650032, P.R. China.
Department of Hepatobiliary Surgery, The Affiliated Hospital of Kunming University of Science and Technology, Kunming, Yunnan 650032, P.R. China.
Mol Clin Oncol. 2025 Jun 20;23(2):72. doi: 10.3892/mco.2025.2867. eCollection 2025 Aug.
Hepatocellular carcinoma (HCC) is a highly invasive malignant tumor with limited therapeutic options. In the present study, bioinformatics analysis, including differential expression analysis, functional enrichment, protein-protein interaction network construction, survival analysis and risk model evaluation, identified CRYAB as a central prognostic gene in HCC. Additionally, motif analysis using JASPAR revealed nuclear factor IA (NFIA), as a potential transcriptional regulator of CRYAB. Further experiments were conducted to explore the roles of CRYAB and NFIA in HCC, suggesting that these molecules may serve as promising therapeutic targets for future research. Differentially expressed genes (DEGs) from the Cancer Genome Atlas-liver hepatocellular carcinoma (LIHC) and GSE113996 datasets were identified using the 'limma' package, with Biological Process and Kyoto Encyclopedia of Genes and Genomes enrichment analysis conducted. Overlapping DEGs underwent Protein-protein interaction and prognostic analysis. Key prognostic genes were selected through Kaplan-Meier survival analysis and Least Absolute Shrinkage and Selection Operator regression before they were incorporated into a predictive risk model, which was evaluated by receiver operating characteristic analysis. JASPAR motif analysis identified NFIA as a potential transcriptional regulator of CRYAB, with the TIMER database used to further examine the NFIA expression profile among other cancers. assays using MHCC97H and Huh7 cells were used to examine the roles of CRYAB and NFIA in HCC. Cell counting kit-8 (CCK-8) assay was used to assess proliferation, whilst Transwell assay was used to measure migration and invasion. To investigate the reciprocal regulation, rescue experiments combining NFIA overexpression and CRYAB knockdown were performed to compare their effects on cell proliferation, migration and invasion. Additionally, dual-luciferase assay was used to examine the regulatory effect of NFIA on the CRYAB promoter by comparing the wild-type and mutant constructs. Bioinformatics analyses revealed CRYAB to be a hub gene. CRYAB upregulation was found to be associated with poor prognosis in patients with LIHC. , elevated CRYAB expression was observed in HCC cell lines compared with that in the huma liver immortalized cell line THLE-2. CRYAB knockdown was found to significantly inhibit MHCC97H and Huh7 cell proliferation, migration and invasion. By contrast, NFIA expression was found to be downregulated in LIHC compared with that in normal liver tissues, where its expression showed an inverse association with that of CRYAB. Direct interaction between NFIA and the CRYAB promoter region was confirmed through dual-luciferase assays. Furthermore, low NFIA expression markedly enhanced HCC cell proliferation, invasion and migration. This pro-tumor effect was reversed in the si-NFIA + si-CRYAB group, where simultaneous downregulation of CRYAB significantly reduced cell proliferation, migration and invasion, suggesting that CRYAB downregulation can counteract the effects induced by low NFIA expression. To conclude, these results suggest that NFIA can inhibit the malignant proliferation of HCC cells by activating CRYAB expression, which further suggest that CRYAB and NFIA are promising avenues for the development of novel HCC treatment strategies.
肝细胞癌(HCC)是一种侵袭性很强的恶性肿瘤,治疗选择有限。在本研究中,通过生物信息学分析,包括差异表达分析、功能富集、蛋白质-蛋白质相互作用网络构建、生存分析和风险模型评估,确定CRYAB是HCC中的一个核心预后基因。此外,使用JASPAR进行的基序分析揭示了核因子IA(NFIA)是CRYAB的潜在转录调节因子。进一步开展实验以探究CRYAB和NFIA在HCC中的作用,表明这些分子可能是未来研究中很有前景的治疗靶点。使用“limma”软件包从癌症基因组图谱-肝细胞癌(LIHC)和GSE113996数据集中鉴定差异表达基因(DEG),并进行生物过程和京都基因与基因组百科全书富集分析。对重叠的DEG进行蛋白质-蛋白质相互作用和预后分析。通过Kaplan-Meier生存分析和最小绝对收缩和选择算子回归选择关键预后基因,然后将其纳入预测风险模型,并通过受试者工作特征分析进行评估。JASPAR基序分析确定NFIA是CRYAB的潜在转录调节因子,使用TIMER数据库进一步检查NFIA在其他癌症中的表达谱。使用MHCC97H和Huh7细胞进行实验以研究CRYAB和NFIA在HCC中的作用。使用细胞计数试剂盒-8(CCK-8)检测法评估增殖,而使用Transwell检测法测量迁移和侵袭。为了研究相互调节作用,进行了NFIA过表达和CRYAB敲低相结合的挽救实验,以比较它们对细胞增殖、迁移和侵袭的影响。此外,通过比较野生型和突变型构建体,使用双荧光素酶检测法检查NFIA对CRYAB启动子的调节作用。生物信息学分析显示CRYAB是一个枢纽基因。发现CRYAB上调与LIHC患者的不良预后相关。此外,与人类肝脏永生化细胞系THLE-2相比,在HCC细胞系中观察到CRYAB表达升高。发现CRYAB敲低可显著抑制MHCC97H和Huh7细胞的增殖、迁移和侵袭。相比之下,发现与正常肝组织相比,LIHC中NFIA表达下调,其表达与CRYAB呈负相关。通过双荧光素酶检测证实了NFIA与CRYAB启动子区域之间的直接相互作用。此外,低NFIA表达显著增强了HCC细胞的增殖、侵袭和迁移。在si-NFIA + si-CRYAB组中这种促肿瘤作用被逆转,其中同时下调CRYAB显著降低了细胞增殖、迁移和侵袭,表明CRYAB下调可抵消低NFIA表达诱导的作用。总之,这些结果表明NFIA可通过激活CRYAB表达来抑制HCC细胞的恶性增殖,这进一步表明CRYAB和NFIA是开发新型HCC治疗策略的有前景途径。
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