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特定RNA结合蛋白的细胞失衡与有害的R环相关。

Cellular imbalance of specific RNA-binding proteins associates with harmful R-loops.

作者信息

Mérida-Cerro José Antonio, Chevreux Guillaume, Palancade Benoit, Rondón Ana G, Aguilera Andrés

机构信息

Centro Andaluz de Biología Molecular y Medicina Regenerativa (CABIMER), Universidad de Sevilla-CSIC-Universidad Pablo de Olavide, Seville, Spain.

Université Paris Cité, CNRS, Institut Jacques Monod, Paris, France.

出版信息

PLoS Genet. 2025 Jul 2;21(7):e1011491. doi: 10.1371/journal.pgen.1011491. eCollection 2025 Jul.

DOI:10.1371/journal.pgen.1011491
PMID:40601718
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12251259/
Abstract

Understanding how the assembly of nascent mRNA into a ribonucleoprotein (mRNP) influences R-loop homeostasis is crucial for gaining insight into the cellular mechanisms that prevent genome instability. Here, we identify three RNA-binding proteins, Rie1, Rim4 and She2, whose expression levels are important to limit R-loop accumulation and, thus, to prevent DNA damage. Interestingly, Rim4 and She2 are overrepresented in CBP80-containing mRNPs formed in the absence of THO. In addition, we found that an excess of the RNA exosome component Dis3 impairs its function, promoting R-loops, particularly from non-coding RNAs, which cause genomic instability. Our results indicate that changes in the availability of different RBPs or RNAs, causes R-loop-mediated DNA damage in the cell. These results may help to understand the mechanism that promotes cancer, as several RBPs are overexpressed in different types of tumors.

摘要

了解新生mRNA组装成核糖核蛋白(mRNP)如何影响R环稳态,对于深入了解预防基因组不稳定的细胞机制至关重要。在这里,我们鉴定出三种RNA结合蛋白,即Rie1、Rim4和She2,它们的表达水平对于限制R环积累从而预防DNA损伤很重要。有趣的是,在缺乏THO的情况下形成的含CBP80的mRNP中,Rim4和She2的含量过高。此外,我们发现过量的RNA外切体成分Dis3会损害其功能,促进R环形成,特别是来自非编码RNA的R环,这会导致基因组不稳定。我们的结果表明,不同RNA结合蛋白或RNA可用性的变化会导致细胞中R环介导的DNA损伤。这些结果可能有助于理解促进癌症的机制,因为几种RNA结合蛋白在不同类型的肿瘤中过表达。

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本文引用的文献

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RNA biogenesis and RNA metabolism factors as R-loop suppressors: a hidden role in genome integrity.RNA 生物发生和 RNA 代谢因子作为 R 环的抑制剂:在基因组完整性方面的隐藏作用。
Genes Dev. 2024 Jul 19;38(11-12):504-527. doi: 10.1101/gad.351853.124.
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Single-molecule quantitation of RNA-binding protein occupancy and stoichiometry defines a role for Yra1 (Aly/REF) in nuclear mRNP organization.单分子定量分析 RNA 结合蛋白占有率和化学计量比,定义了 Yra1(Aly/REF)在核 mRNP 组织中的作用。
Cell Rep. 2023 Nov 28;42(11):113415. doi: 10.1016/j.celrep.2023.113415. Epub 2023 Nov 14.
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A R-loop sensing pathway mediates the relocation of transcribed genes to nuclear pore complexes.
R 环感应途径介导转录基因向核孔复合体的重定位。
Nat Commun. 2023 Sep 20;14(1):5606. doi: 10.1038/s41467-023-41345-z.
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Binding of the nuclear ribonucleoprotein family member FUS to RNA prevents R-loop RNA:DNA hybrid structures.核核糖核蛋白家族成员 FUS 与 RNA 的结合可防止 R 环 RNA:DNA 杂交结构的形成。
J Biol Chem. 2023 Oct;299(10):105237. doi: 10.1016/j.jbc.2023.105237. Epub 2023 Sep 9.
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Nuclear mRNPs are compact particles packaged with a network of proteins promoting RNA-RNA interactions.核 mRNPs 是与促进 RNA-RNA 相互作用的蛋白质网络包装在一起的紧密颗粒。
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Loss of ribonuclease DIS3 hampers genome integrity in myeloma by disrupting DNA:RNA hybrid metabolism.核糖核酸酶 DIS3 的缺失通过破坏 DNA:RNA 杂交代谢来阻碍骨髓瘤中的基因组完整性。
EMBO J. 2022 Nov 17;41(22):e108040. doi: 10.15252/embj.2021108040. Epub 2022 Oct 10.
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Mol Cell. 2022 Jun 16;82(12):2267-2297. doi: 10.1016/j.molcel.2022.04.014. Epub 2022 May 3.
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