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大型基因组与Synura属微藻中更大的细胞大小以及向更富氮和高纬度环境的生态转变有关。

Large Genomes Are Associated With Greater Cell Size and Ecological Shift Towards More Nitrogen-Rich and Higher-Latitude Environments in Microalgae of the Genus Synura.

作者信息

Čertnerová Dora, Škaloud Pavel, Jadrná Iva, Čertner Martin

机构信息

Department of Botany, Faculty of Science, Charles University, Prague, Czech Republic.

Research Department for Limnology, University of Innsbruck, Mondsee, Austria.

出版信息

J Eukaryot Microbiol. 2025 Jul-Aug;72(4):e70026. doi: 10.1111/jeu.70026.

Abstract

The nuclear genome is essential for encoding most of the genes required for cellular processes, but its size alone can alter the characteristics of cells and organisms. Yet, genome size variation and its ecological and evolutionary impacts, particularly in microorganisms, are not well understood. We used flow cytometry to estimate genome size and GC content in 53 evolutionary lineages of the microalgal genus Synura (Chrysophyceae, Stramenopiles). Genome size evolution was reconstructed in a phylogenetic framework using molecular markers. A set of genomic, morphological, and ecogeographic variables characterizing Synura lineages was evaluated and tested as predictors of genome size variation in phylogeny-corrected statistical models. Both genome size and GC content varied widely in Synura, ranging from 0.19 to 3.70 pg of DNA and 34.0% to 49.3%, respectively. Genome size variation was mainly associated with cell size, less with silica scale size, and not with scale ultrastructure. Higher soil nitrogen, higher latitudes, and lower temperatures correlated with larger genomes. Genome size evolution in Synura shows potential dynamism, with increases confined to short terminal branches, indicating lower macroevolutionary stability. Lineages with larger genomes exhibited a narrower range of suitable ecological conditions, possibly due to selection acting deleteriously against larger genomes (and cells).

摘要

核基因组对于编码细胞过程所需的大多数基因至关重要,但其大小本身就可以改变细胞和生物体的特征。然而,基因组大小变异及其生态和进化影响,尤其是在微生物中,尚未得到充分理解。我们使用流式细胞术来估计微藻Synura属(金藻纲,不等鞭毛类)53个进化谱系的基因组大小和GC含量。利用分子标记在系统发育框架中重建基因组大小的进化。评估并测试了一组表征Synura谱系的基因组、形态和生态地理变量,作为系统发育校正统计模型中基因组大小变异的预测因子。Synura的基因组大小和GC含量均有广泛变化,分别从0.19到3.70 pg DNA以及从34.0%到49.3%不等。基因组大小变异主要与细胞大小相关,与硅质鳞片大小的相关性较小,与鳞片超微结构无关。土壤氮含量较高、纬度较高和温度较低与较大的基因组相关。Synura的基因组大小进化显示出潜在的动态性,增加仅限于短的末端分支,表明宏观进化稳定性较低。基因组较大的谱系表现出较窄的适宜生态条件范围,这可能是由于选择对较大的基因组(和细胞)产生有害作用所致。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d020/12223332/928fd5a6af01/JEU-72-e70026-g004.jpg

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