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绵羊卵巢发育的整合单细胞转录组学揭示了与繁殖性状相关的动态转录程序。

Integrative single-cell transcriptomics of sheep ovarian development reveals dynamic transcriptional programs relevant to reproductive traits.

作者信息

Zhao Bingru, Dai Keke, Li Shanglai, Zhang Guomin, Lv Wenli, Liu Wanru, Cai Yu, Wang Feng, Zhou Huaijun, Guan Dailu, Zhang Yanli

机构信息

Jiangsu Livestock Embryo Engineering Laboratory, College of Animal Science and Technology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China.

Department of Animal Science, University of California, Davis, Davis, CA 95616, USA.

出版信息

iScience. 2025 Apr 14;28(5):112422. doi: 10.1016/j.isci.2025.112422. eCollection 2025 May 16.

DOI:10.1016/j.isci.2025.112422
PMID:40641558
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12245445/
Abstract

Sheep () are valuable biomedical models for studying human reproductive biology, however, the transcriptional dynamics underlying their ovarian development remain insufficiently characterized. In this study, we profiled 61,649 single-cell transcriptomes from sheep ovarian tissues across key developmental stages: prenatal (E90), pre-puberty (M3), post-puberty (M6), and adulthood (Y2, Y4). We identified nine major cell types with distinct and dynamic gene expression patterns, highlighting significant developmental transitions. Notably, granulosa cells exhibited profound transcriptomic shifts, underscoring their critical role in oocyte maturation and follicular development. Key transcription factors, such as FOXO1 and ESR1, were identified as potential drivers of these transitions. Further cross-species comparisons revealed strong conservation in cell types, composition, and gene expression networks between sheep and human developing ovaries. Leveraging these conserved features, we uncovered context-dependent (e.g., cell-type-specific, developmental-stage-specific) associations with human reproductive traits and diseases. These findings advance our understanding of ovarian development in sheep and reinforce their utility as translational models in reproductive biology and disease research.

摘要

绵羊是研究人类生殖生物学的重要生物医学模型,然而,其卵巢发育的转录动态仍未得到充分表征。在本研究中,我们对绵羊卵巢组织在关键发育阶段(产前(E90)、青春期前(M3)、青春期后(M6)和成年期(Y2、Y4))的61,649个单细胞转录组进行了分析。我们鉴定出了九种主要细胞类型,它们具有独特且动态的基因表达模式,突出了显著的发育转变。值得注意的是,颗粒细胞表现出深刻的转录组变化,强调了它们在卵母细胞成熟和卵泡发育中的关键作用。关键转录因子,如FOXO1和ESR1,被确定为这些转变的潜在驱动因素。进一步的跨物种比较揭示了绵羊和人类发育中的卵巢在细胞类型、组成和基因表达网络方面的高度保守性。利用这些保守特征,我们发现了与人类生殖性状和疾病的上下文依赖性(如细胞类型特异性、发育阶段特异性)关联。这些发现增进了我们对绵羊卵巢发育的理解,并加强了它们作为生殖生物学和疾病研究中转译模型的效用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/abb5/12245445/8cfb9d97be04/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/abb5/12245445/9c1bb904b6dc/fx1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/abb5/12245445/80b859133612/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/abb5/12245445/ae14d463012b/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/abb5/12245445/87f0df05f41c/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/abb5/12245445/280ac60deeb8/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/abb5/12245445/d0b2e6d9eeb5/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/abb5/12245445/8cfb9d97be04/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/abb5/12245445/9c1bb904b6dc/fx1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/abb5/12245445/80b859133612/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/abb5/12245445/ae14d463012b/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/abb5/12245445/87f0df05f41c/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/abb5/12245445/280ac60deeb8/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/abb5/12245445/d0b2e6d9eeb5/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/abb5/12245445/8cfb9d97be04/gr6.jpg

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本文引用的文献

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Understanding the genetic complexity of puberty timing across the allele frequency spectrum.理解整个等位基因频率谱中青春期启动的遗传复杂性。
Nat Genet. 2024 Jul;56(7):1397-1411. doi: 10.1038/s41588-024-01798-4. Epub 2024 Jul 1.
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A time-resolved multi-omics atlas of transcriptional regulation in response to high-altitude hypoxia across whole-body tissues.
高海拔低氧应激下全身性组织转录调控的时间分辨多组学图谱
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Cell. 2024 May 9;187(10):2343-2358. doi: 10.1016/j.cell.2024.03.009.
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Spatiotemporal transcriptomic changes of human ovarian aging and the regulatory role of FOXP1.人类卵巢衰老的时空转录组变化及 FOXP1 的调控作用。
Nat Aging. 2024 Apr;4(4):527-545. doi: 10.1038/s43587-024-00607-1. Epub 2024 Apr 9.
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Cellular atlas of the human ovary using morphologically guided spatial transcriptomics and single-cell sequencing.基于形态学指导的空间转录组学和单细胞测序的人类卵巢细胞图谱
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Integrative cross-omics and cross-context analysis elucidates molecular links underlying genetic effects on complex traits.综合跨组学和跨环境分析阐明了遗传效应对复杂性状的分子关联。
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A single-cell atlas of the aging mouse ovary.衰老小鼠卵巢的单细胞图谱。
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