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通过网络药理学和分子对接揭示叶化合物的抗黑色素瘤机制

Uncovering Anti-Melanoma Mechanisms of Leaf Compounds via Network Pharmacology and Molecular Docking.

作者信息

Darilag Gen Maxxine C, Liu Hsuan-Chieh, Hsieh Cheng-Yang, Tayo Lemmuel L, Talubo Nicholas Dale D, Yang Shu-Ching, Chang Ching-Hui, Huang Ying-Pin, Lee Shih-Chi, Liu Yung-Chuan, Tsai Po-Wei

机构信息

School of Chemical, Biological, and Materials Engineering and Sciences, Mapúa University, Metro Manila 1002, Philippines.

Department of Chemical Engineering, National Chung Hsing University, Taichung 402, Taiwan.

出版信息

Int J Mol Sci. 2025 Jun 25;26(13):6120. doi: 10.3390/ijms26136120.

Abstract

Skin cancer, particularly melanoma, remains a major public health concern due to its high mortality rate. Current treatment options, including chemotherapy with dacarbazine and doxorubicin, have shown limited efficacy, achieving only a 20% objective response rate over six months, along with severe side effects such as cardiotoxicity. Given these limitations, there is a growing interest in herbal medicine as a source of novel anticancer compounds. , a bamboo species native to Taiwan, was investigated for its potential anti-melanoma properties using network pharmacology and molecular docking. LC-MS analysis identified seven bioactive compounds, including quinic acid and isovitexin, which satisfied Lipinski's drug-likeness criteria. Among the seven bioactive compounds identified, five belong to the flavonoid family, while two are classified as phenolic compounds that modulate signaling pathways related to cancer and exhibit antioxidant activity, respectively. Through pathway enrichment analysis, four key melanoma-associated genes (PIM1, MEK1, CDK2, and PDK1) were identified as potential therapeutic targets. Ensemble docking results demonstrated that naringin-7-rhamnoglucoside exhibited the highest binding affinity (-6.30 kcal/mol) with phosphoinositide-dependent kinase-1, surpassing the affinities of standard chemotherapeutic agents. Additionally, the average docking scores for naringin-7-rhamnoglucoside and the remaining three proteins were as follows: PIM1 (-5.92), MEK1 (-6.07), and CDK2 (-5.26). These findings suggest that the bioactive compounds in may play a crucial role in inhibiting melanoma progression by modulating metabolic and signaling pathways. Further in vitro and in vivo studies are necessary to validate these computational findings and explore the potential of as a complementary therapeutic agent for melanoma.

摘要

皮肤癌,尤其是黑色素瘤,因其高死亡率仍然是一个主要的公共卫生问题。目前的治疗选择,包括使用达卡巴嗪和阿霉素的化疗,疗效有限,在六个月内仅达到20%的客观缓解率,同时还伴有严重的副作用,如心脏毒性。鉴于这些局限性,人们对草药作为新型抗癌化合物来源的兴趣日益浓厚。对一种原产于台湾的竹子物种进行了网络药理学和分子对接研究,以探究其潜在的抗黑色素瘤特性。液相色谱-质谱分析鉴定出七种生物活性化合物,包括奎尼酸和异荭草素,它们符合Lipinski的类药标准。在鉴定出的七种生物活性化合物中,五种属于黄酮类家族,而两种被归类为酚类化合物,分别调节与癌症相关的信号通路并具有抗氧化活性。通过通路富集分析,确定了四个关键的黑色素瘤相关基因(PIM1、MEK1、CDK2和PDK1)作为潜在的治疗靶点。整体对接结果表明,柚皮苷-7-鼠李糖葡萄糖苷与磷酸肌醇依赖性激酶-1的结合亲和力最高(-6.30千卡/摩尔),超过了标准化疗药物的亲和力。此外,柚皮苷-7-鼠李糖葡萄糖苷与其余三种蛋白质的平均对接分数如下:PIM1(-5.92)、MEK1(-6.07)和CDK2(-5.26)。这些发现表明,该竹子物种中的生物活性化合物可能通过调节代谢和信号通路在抑制黑色素瘤进展中发挥关键作用。需要进一步的体外和体内研究来验证这些计算结果,并探索该竹子物种作为黑色素瘤辅助治疗剂的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9bd8/12250477/cc478703683c/ijms-26-06120-g001.jpg

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