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通用蛋白质知识库(UniProt):2025年的情况

UniProt: the Universal Protein Knowledgebase in 2025.

出版信息

Nucleic Acids Res. 2025 Jan 6;53(D1):D609-D617. doi: 10.1093/nar/gkae1010.

DOI:10.1093/nar/gkae1010
PMID:39552041
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11701636/
Abstract

The aim of the UniProt Knowledgebase (UniProtKB; https://www.uniprot.org/) is to provide users with a comprehensive, high-quality and freely accessible set of protein sequences annotated with functional information. In this publication, we describe ongoing changes to our production pipeline to limit the sequences available in UniProtKB to high-quality, non-redundant reference proteomes. We continue to manually curate the scientific literature to add the latest functional data and use machine learning techniques. We also encourage community curation to ensure key publications are not missed. We provide an update on the automatic annotation methods used by UniProtKB to predict information for unreviewed entries describing unstudied proteins. Finally, updates to the UniProt website are described, including a new tab linking protein to genomic information. In recognition of its value to the scientific community, the UniProt database has been awarded Global Core Biodata Resource status.

摘要

通用蛋白质资源知识库(UniProtKB;https://www.uniprot.org/)的目标是为用户提供一组经过功能信息注释的全面、高质量且可免费获取的蛋白质序列。在本出版物中,我们描述了我们生产流程中正在进行的更改,以将UniProtKB中可用的序列限制为高质量、非冗余的参考蛋白质组。我们继续人工整理科学文献以添加最新的功能数据,并使用机器学习技术。我们还鼓励社区编辑,以确保不会遗漏关键出版物。我们提供了UniProtKB用于预测未研究蛋白质的未审查条目的信息的自动注释方法的更新。最后,描述了UniProt网站的更新,包括一个将蛋白质与基因组信息链接起来的新标签。鉴于其对科学界的价值,UniProt数据库已被授予全球核心生物数据资源地位。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c1a/11701636/2306341f9069/gkae1010fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c1a/11701636/4be2b0ace48d/gkae1010figgra1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c1a/11701636/c1d79a3417af/gkae1010fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c1a/11701636/7551852bf1f6/gkae1010fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c1a/11701636/861021972eb1/gkae1010fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c1a/11701636/2306341f9069/gkae1010fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c1a/11701636/4be2b0ace48d/gkae1010figgra1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c1a/11701636/c1d79a3417af/gkae1010fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c1a/11701636/7551852bf1f6/gkae1010fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c1a/11701636/861021972eb1/gkae1010fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c1a/11701636/2306341f9069/gkae1010fig4.jpg

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