The primate cerebral cortex relies on long-range connections to integrate information between functionally specialized areas. Investigating these processes requires tools that can selectively modulate specific projection pathways. While cell-class-specific optogenetics can modulate local circuits, these approaches often lack pathway specificity. Projection-specific optogenetics offers greater precision, especially in primates, where cortical areas are spatially and functionally well-separated. To address challenges in translating this approach from rodents to primates, we developed a mouse-to-marmoset pipeline. We first validated that optogenetic targeting of inhibitory neurons (AAV9-Dlx-ChR2) effectively silenced local cortical areas in marmosets. We then tested selective excitation and inhibition of defined projection pathways. By intersecting retrogradely delivered Cre-recombinase (AAVretro-Cre) with locally injected Cre-dependent opsins (AAV8-FLEx-ChR2 or Jaws), we achieved efficient, direction-specific labeling of both callosal and longitudinal projections. This intersectional strategy enabled precise excitatory and inhibitory control of cortical activity using distinct light wavelengths, advancing projection-specific optogenetics for investigating primate brain circuit function.