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辅酶A连接介导了扁平霉素、扁平菌素和扁平青霉素生物合成中脱水酶的底物选择性及反应特异性。

Coenzyme A Tethering Mediates Dehydratase Substrate Promiscuity and Reaction Specificity in Platensimycin, Platencin, and Platensilin Biosynthesis.

作者信息

Fluegel Lucas L, Steele Andrew D, Kalkreuter Edward, Gui Chun, Yang Dong, Shen Ben

机构信息

Department of Chemistry, The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology, University of Florida, Jupiter, Florida 33458, United States.

Skaggs Graduate School of Chemical and Biological Sciences, Scripps Research, Jupiter, Florida 33458, United States.

出版信息

Biochemistry. 2025 Aug 5;64(15):3418-3431. doi: 10.1021/acs.biochem.5c00282. Epub 2025 Jul 16.

Abstract

Biosynthetic studies of the platensimycin (PTM), platencin (PTN), and platensilin (PTL) family of natural products have revealed numerous insights into the chemistry and enzymology of diterpenoid biosynthesis. A deeper understanding of the PTM biosynthetic machinery would advance fundamental knowledge in natural product biosynthesis and facilitate future efforts to exploit these compounds as potential leads for biomedical applications. Herein, we report the functional characterization of the gene that encodes the dehydratase responsible for the formation of the C6-C7 enone moiety in PTM, PTN, and PTL. In vitro experiments, enabled by the semisynthesis of designer substrates and mimics, reveal that PtmU1 is selective for multiple coenzyme A (CoA)-tethered substrates but specific only to the (7)-hydroxyl group for dehydration. A combination of kinetics analyses, targeted mutagenesis, and in silico docking studies identifies an arginine-rich structural element of PtmU1 that acts as a dynamic CoA-binding anchor, revealing a unique strategy for CoA binding that presumably contributes to the substrate promiscuity and dehydration specificity of PtmU1. Finally, a bioinformatics investigation identifies PtmU1 homologues bearing this CoA-binding motif, suggesting that the observed biosynthetic chemistry might be broadly distributed. Taken together, these results shed new insights into PTM, PTN, and PTL biosynthesis and reveal a new perspective on the role of CoA in substrate binding and enzyme catalysis.

摘要

对天然产物的扁平霉素(PTM)、扁平菌素(PTN)和扁平丝素(PTL)家族的生物合成研究,揭示了二萜生物合成化学和酶学方面的诸多见解。对PTM生物合成机制更深入的理解,将推动天然产物生物合成基础知识的发展,并促进未来将这些化合物开发为生物医学应用潜在先导物的努力。在此,我们报告了编码负责在PTM、PTN和PTL中形成C6-C7烯酮部分的脱水酶的基因的功能表征。通过设计底物和模拟物的半合成实现的体外实验表明,PtmU1对多种与辅酶A(CoA)连接的底物具有选择性,但仅对(7)-羟基进行脱水具有特异性。动力学分析、定向诱变和计算机对接研究相结合,确定了PtmU1富含精氨酸的结构元件,它作为动态的CoA结合锚,揭示了一种独特的CoA结合策略,这可能有助于PtmU1的底物混杂性和脱水特异性。最后,生物信息学研究确定了带有这种CoA结合基序的PtmU1同源物,表明所观察到的生物合成化学可能广泛分布。综上所述,这些结果为PTM、PTN和PTL的生物合成提供了新的见解,并揭示了CoA在底物结合和酶催化中的作用的新视角。

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