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基于生物信息学分析鉴定糖尿病视网膜病变中关键的二硫化物诱导细胞程序性坏死基因和调控生物标志物。

Identification of crucial disulfidptosis genes and regulatory biomarkers in diabetic retinopathy based on bioinformatics analysis.

作者信息

Jiang Luyang, Du Qibo, Ruan Jiali, He Jinjin, Luo Xiejiang, Yang Yumei

机构信息

Shangyu People's Hospital of Shaoxing, Shimin Street 517, Shangyu District, Shaoxing City, Zhejiang Province, China.

Shangyu People's Hospital of Shaoxing, Shimin Street 517, Shangyu District, Shaoxing City, Zhejiang Province, China.

出版信息

Biochem Biophys Res Commun. 2025 Sep 8;778:152355. doi: 10.1016/j.bbrc.2025.152355. Epub 2025 Jul 15.

Abstract

Diabetic retinopathy is characterized by retinal microvasculature dysfunction which remains a major cause of vision impairment. Recent findings indicate that disulfidptosis, a novel cell death mechanism, may play a role in DR pathogenesis, though its underlying mechanisms are not yet understood. Therefore, it is crucial to identify disulfidptosis-related biomarkers to advance the research on diabetic retinopathy. Transcriptome data from the GSE102485 and GSE160306 datasets were analysed to identify common differentially expressed genes. Weighted gene co-expression network analysis was applied to identify module genes associated with disulfidptosis in the GSE102485 dataset. Disulphidptosis-related differentially expressed genes were determined by overlapping common differentially expressed genes with key module genes. The MCC algorithm of the protein-protein interaction network was used to identify Five key biomarkers including ITGAM, C1QA, SPI1, TYROBP, and FCGR2B were identified with significant diagnostic potential for DR. Furthermore, immune infiltration and gene set enrichment analysis revealed their association with immune cell infiltration, particularly memory B cells and follicular helper T cells. Pathway enrichment analysis indicated roles in apoptosis and ribosome pathways, highlighting their potential in DR pathogenesis. Additionally, drug-target predictions identified Bevacizumab, Daclizumab, and Palivizumab as possible therapeutic options targeting C1QA and FCGR2B. These findings establish a theoretical foundation for leveraging disulfidptosis-related biomarkers in DR diagnosis and treatment.

摘要

糖尿病视网膜病变的特征是视网膜微血管功能障碍,这仍然是视力损害的主要原因。最近的研究结果表明,一种新的细胞死亡机制——二硫键凋亡,可能在糖尿病视网膜病变的发病机制中起作用,但其潜在机制尚不清楚。因此,识别与二硫键凋亡相关的生物标志物对于推进糖尿病视网膜病变的研究至关重要。对来自GSE102485和GSE160306数据集的转录组数据进行分析,以识别共同的差异表达基因。应用加权基因共表达网络分析来识别GSE102485数据集中与二硫键凋亡相关的模块基因。通过将共同的差异表达基因与关键模块基因重叠来确定与二硫键凋亡相关的差异表达基因。蛋白质-蛋白质相互作用网络的MCC算法用于识别五个关键生物标志物,包括ITGAM、C1QA、SPI1、TYROBP和FCGR2B,它们对糖尿病视网膜病变具有显著的诊断潜力。此外,免疫浸润和基因集富集分析揭示了它们与免疫细胞浸润的关联,特别是记忆B细胞和滤泡辅助性T细胞。通路富集分析表明它们在凋亡和核糖体通路中发挥作用,突出了它们在糖尿病视网膜病变发病机制中的潜力。此外,药物靶点预测确定贝伐单抗、达利珠单抗和帕利珠单抗为针对C1QA和FCGR2B的可能治疗选择。这些发现为利用与二硫键凋亡相关的生物标志物进行糖尿病视网膜病变的诊断和治疗奠定了理论基础。

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